PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G158300.1 | ||||||||
Common Name | PHAVU_010G158300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 29470.8 Da PI: 6.7561 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 93 | 138 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR++i ++f L +P + kK +Ka+iL +A++Y+++Lq Phvul.010G158300.1 93 HIISERKRRQDIAEKFIALSATIPGL-----KKIDKASILGEAIKYMRQLQ 138 8899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.684 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-16 | 91 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 93 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.69E-10 | 93 | 142 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-15 | 93 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-12 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MMEDSWQNWL SHLGMNDNFG CSSNVCFEEM VWLDNGQGCD RSNNEVGCMG MKEEHSECCC 60 SKRGVGKHEE LEEKGREKRG TKRARTSSEI EYHIISERKR RQDIAEKFIA LSATIPGLKK 120 IDKASILGEA IKYMRQLQQR IAVLEKASNN NNSAKSLIIT KSHLCSTSCE QNSNIEVEAR 180 GLENEVLIRI YCEQRKDIML NLITLLKDLH LSVTTSTVLP FGNSLLNIII VAQMSEEYNL 240 TITDLVKTLK QNLFKFCEV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 101 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G158300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 4e-85 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007135786.1 | 0.0 | hypothetical protein PHAVU_010G158300g | ||||
TrEMBL | V7AR49 | 0.0 | V7AR49_PHAVU; Uncharacterized protein | ||||
STRING | XP_007135786.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14964 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 8e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G158300.1 |
Entrez Gene | 18618587 |