PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G130000.1
Common NamePHAVU_010G130000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRF
Protein Properties Length: 340aa    MW: 38612.5 Da    PI: 8.1337
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G130000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.14.1e-2578122145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  Phvul.010G130000.1  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 122
                         79****************************************985 PP
2QLQ54.53.5e-191247136
                 QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        s+FT++Q+q+L++Q+l++Ky++ + P+Pp+L+  i+
  Phvul.010G130000.1 12 SPFTPTQWQELEQQALVFKYMVTGTPIPPDLIYSIK 47
                        89*****************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-111248IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.0091348IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-141346IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32578122IPR014977WRC domain
PfamPF088793.1E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMSASASARN RSPFTPTQWQ ELEQQALVFK YMVTGTPIPP DLIYSIKRSL DSSISSRLFP  60
HHPIGWGCFE MGFGRKVDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EVSSATSTAT NTSQTIPSYT RNLSLTNPTI TSPSFPFSPL PSSLSCDSQA FSQSYQNPSL  180
NPFFYAQSTS SRPPDSDFPP QDATTHQLFM DSGSYSHDEK DYRHVHGIRE DVDERAFFPE  240
ASGSARSYTD SYQQLSMSSY KSYSNSNFQN INDATNPRQQ EQQHCFVLGT DFKSTRPIKE  300
KEAETTSQRP LHRFFGEWPP KNTDSWLDLA SNSRIPTDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G130000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135443.10.0hypothetical protein PHAVU_010G130000g
TrEMBLV7AP530.0V7AP53_PHAVU; Uncharacterized protein
STRINGXP_007135443.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-54growth-regulating factor 5