PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G124700.1 | ||||||||
Common Name | PHAVU_010G124700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 385aa MW: 42688.3 Da PI: 4.6131 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g Phvul.010G124700.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDTEARRIRG 165 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.078 | 116 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 116 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.62E-32 | 116 | 174 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-22 | 116 | 174 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 116 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-11 | 117 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MCGGAIISDF IPAGPAGRSR RVTADILWPN LRKRFSKPLL DDDFEAGFRE FKDDSEIEDD 60 DDEDEEDLMV IGVKKPFGFT RPNKTSKSLS RASSTVNSVE SKGQAEESAK RKRKNQYRGI 120 RQRPWGKWAA EIRDPRKGVR VWLGTFSTAE EAARAYDTEA RRIRGKKAKV NFPDEPSAAS 180 SKRLKVNPEA QPLKGKLNSV KPKMNQMFNF GDYLEDYYSS VDQVEQKPLV NQYVNPGPFT 240 GNGVQLSPVT PSADVIAYFS SEHSSNSFDY SDLGWGEQVS KTPEISSMLS APLEGESQFV 300 QGADQIQRND TQDMLSVQDD SAKTLSEELA DIESQLKFFE TPLFDGSWTE ASLASLLGTD 360 ATQDAGNPLN LWSFDDLPSM AGVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 116 | 173 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-21 | 115 | 181 | 13 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G124700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN416602 | 0.0 | JN416602.1 Glycine max cultivar Jilin 32 ethylene-responsive transcription factor 7 (ERF7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007135380.1 | 0.0 | hypothetical protein PHAVU_010G124700g | ||||
TrEMBL | V7AP71 | 0.0 | V7AP71_PHAVU; Uncharacterized protein | ||||
STRING | XP_007135380.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 9e-58 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G124700.1 |
Entrez Gene | 18618241 |