PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G121100.2
Common NamePHAVU_010G121100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 477aa    MW: 54095.7 Da    PI: 6.1122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G121100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.81.3e-46111401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp+GfrF+Ptdeelv++yLk+k+ g+++++ ++i+e+d++kvePwd p k  +k++e +w+fFs+ d ky+++kr nr+t++g+Wk+tg+d
  Phvul.010G121100.2  11 LPVGFRFRPTDEELVNHYLKHKLLGDDFSV-QFIPEIDLCKVEPWDVPaKsIFKSDELQWFFFSSVDYKYSNSKRVNRTTEHGFWKSTGND 100
                         79****************************.89***************6434555666********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++++  +++++g+kktLvf+kgr p g++t+Wv+hey++
  Phvul.010G121100.2 101 RNIKTGgSKNVIGTKKTLVFHKGRVPGGQRTNWVIHEYHA 140
                         ****9856677***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-528157IPR003441NAC domain
PROSITE profilePS5100551.57311157IPR003441NAC domain
PfamPF023654.1E-2512139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEDIISILDH LPVGFRFRPT DEELVNHYLK HKLLGDDFSV QFIPEIDLCK VEPWDVPAKS  60
IFKSDELQWF FFSSVDYKYS NSKRVNRTTE HGFWKSTGND RNIKTGGSKN VIGTKKTLVF  120
HKGRVPGGQR TNWVIHEYHA LASRESQTYV LCRLMKKFEN KNEGRIDAPN FSGGEPSTSM  180
VSDYGNQADI LPRMIVDPIF PEEIFFSPVQ QPPVGIEVEG FFPNSPTRNA CFGNESINMQ  240
IPFGVTDDED EFLNSILVDN EEFVINEERR DCFVNRSTQP KSLRRVYYAS SDTDAEVVSN  300
LHGNICSGEF SVRGGMSSLA SNHEAHKEKK ESIIQDDFWA VETSSCDSTA DEPVETTRLE  360
NRYNLRPDNF ILQKTVAGRP QTQKKVSNNA VSHIEARKEL VTVKSEKDQK STQNTSSRGI  420
LKIRSHQSSN VNSKSSFFYM ETTSSNQNLF PRSVYLVNVV IGILLLIVIS WDVLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-411115717165NO APICAL MERISTEM PROTEIN
1ut4_B2e-411115717165NO APICAL MERISTEM PROTEIN
1ut7_A2e-411115717165NO APICAL MERISTEM PROTEIN
1ut7_B2e-411115717165NO APICAL MERISTEM PROTEIN
3swm_A1e-411115720168NAC domain-containing protein 19
3swm_B1e-411115720168NAC domain-containing protein 19
3swm_C1e-411115720168NAC domain-containing protein 19
3swm_D1e-411115720168NAC domain-containing protein 19
3swp_A1e-411115720168NAC domain-containing protein 19
3swp_B1e-411115720168NAC domain-containing protein 19
3swp_C1e-411115720168NAC domain-containing protein 19
3swp_D1e-411115720168NAC domain-containing protein 19
4dul_A2e-411115717165NAC domain-containing protein 19
4dul_B2e-411115717165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G121100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150428e-88AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135342.10.0hypothetical protein PHAVU_010G121100g
TrEMBLV7ASZ20.0V7ASZ2_PHAVU; Uncharacterized protein
STRINGXP_007135341.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-54NAC transcription factor-like 9