PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G121000.1
Common NamePHAVU_010G121000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 327aa    MW: 36963 Da    PI: 4.6275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G121000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.24.6e-3841343128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +G+ F+Pt++elv++yLk+k+ +++ ++ + i+ +d+++veP+d p       ++ ++ ew+fFs+ d ky+++kr nr+tk g+Wkatgk
  Phvul.010G121000.1   4 VGVGFRPTEQELVDFYLKHKLLADDSRV-HLIPVIDLCDVEPSDVPVilarsPIRFGDPEWFFFSPVDFKYSNSKRVNRKTKCGFWKATGK 93 
                         79***********************999.88***************5455554444889******************************** PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         d+++ s  +++l+ +kktLv+ykg+ + g+k++Wv+hey++
  Phvul.010G121000.1  94 DRNIRSGdTNTLIATKKTLVYYKGSVSCGVKSNWVIHEYHA 134
                         *****9856667***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.9682152IPR003441NAC domain
SuperFamilySSF1019411.31E-424152IPR003441NAC domain
PfamPF023656.1E-224133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGIVGVGFRP TEQELVDFYL KHKLLADDSR VHLIPVIDLC DVEPSDVPVI LARSPIRFGD  60
PEWFFFSPVD FKYSNSKRVN RKTKCGFWKA TGKDRNIRSG DTNTLIATKK TLVYYKGSVS  120
CGVKSNWVIH EYHAVTFHES KRAFVLCRLM RKPGKATEGG GDPLICDEGE PSTLRDSDYG  180
NQATAERIPS EGSFTGVPLI CDEGGPSELK VSDYGNHSTA EGISSESSFT GVETIFQTRP  240
QADTYFSQNQ QSPEEEAYFP NYPFNNAYFR NEDNFMHYEF ETTKEQEFLN QILADESVVI  300
DEESMSFVNN TIHWETLQEV NFENNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-25515823174NAC domain-containing protein 19
3swm_B2e-25515823174NAC domain-containing protein 19
3swm_C2e-25515823174NAC domain-containing protein 19
3swm_D2e-25515823174NAC domain-containing protein 19
3swp_A2e-25515823174NAC domain-containing protein 19
3swp_B2e-25515823174NAC domain-containing protein 19
3swp_C2e-25515823174NAC domain-containing protein 19
3swp_D2e-25515823174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G121000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135340.10.0hypothetical protein PHAVU_010G121000g
TrEMBLV7AP330.0V7AP33_PHAVU; Uncharacterized protein
STRINGXP_007135340.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.39e-42NAC transcription factor-like 9