PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G120900.3
Common NamePHAVU_010G120900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 477aa    MW: 53392.7 Da    PI: 7.1464
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G120900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.86.6e-31117221199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  Phvul.010G120900.3 117 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvG 207
                         89***************************966667889*************************************************6558 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Phvul.010G120900.3 208 ElYRHRLYIDWRRR 221
                         88888888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-42108228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29113218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-26115204No hitNo description
SMARTSM010191.4E-23117222IPR003340B3 DNA binding domain
PfamPF023622.4E-28117221IPR003340B3 DNA binding domain
PROSITE profilePS5086314.085117222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MELMQEVKGY SDSREEEEEE EAAEEIITRE DSSRLLHQHQ DAAGSNFIIS NHHHHHHHAT  60
KQLDFMDLTL GSSKDEGNLQ GSGGGASSVF PHHASGSSSA DGNVNSLQQP SEKEHMFDKV  120
VTPSDVGKLN RLVIPKQHAE KYFPLDSSAN EKGLLLNFED RNGKLWRFRY SYWNSSQSYV  180
MTKGWSRFVK EKKLDAGDIV SFQRGVGELY RHRLYIDWRR RPDHHHHHGP DPSTALFTPF  240
FLPNQPHFIR WGATGRLYTL PSPNPPRHHD HLQQHLNYNT MYHQHHHPFH HQLQAAAAGG  300
AAGGNGTHHY NYHDMSTSGS GSVYYLRSTP QPMPLTDHQI LNTRQQQEGG NVSHPPIIID  360
SVPVAHHHHH QHHGGKSGSS TSTSPSTAGK RLRLFGVNME CASSTSEHPN CFSLLSSSSM  420
AHVTMANSNS PPSSSLPPLQ LLREDSLSSP SSARFGDQRG EPSMLFDLDP SLQYRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-641112222114B3 domain-containing transcription factor NGA1
5os9_B3e-641112222114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G120900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135337.10.0hypothetical protein PHAVU_010G120900g
RefseqXP_007135338.10.0hypothetical protein PHAVU_010G120900g
RefseqXP_007135339.10.0hypothetical protein PHAVU_010G120900g
TrEMBLV7ANU20.0V7ANU2_PHAVU; Uncharacterized protein
STRINGXP_007135337.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-61B3 family protein