PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G093300.1
Common NamePHAVU_010G093300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 713aa    MW: 81818.3 Da    PI: 7.8908
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G093300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.43.7e-1661145291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +Y++YA + GF +r+++skk   ++ei    +vCs+egk  +   +   e +t +++  +C+a+++v ++ +gkw+++++  eH+H+l+p
  Phvul.010G093300.1  61 YYRQYAITKGFGIRIRSSKKG-VDNEIRYFMLVCSREGKYVSPIPT---EIKTLPTQANECQARITVGRK-EGKWYIMSVIDEHSHDLSP 145
                         8***************99998.6777**************999877...9999***************99.****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1461145IPR004330FAR1 DNA binding domain
PfamPF105513.5E-35263357IPR018289MULE transposase domain
PROSITE profilePS509669.532548584IPR007527Zinc finger, SWIM-type
SMARTSM005750.0022559586IPR006564Zinc finger, PMZ-type
PfamPF044341.0E-4560580IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MSENNNLSLD DIPIVEGEVS AVGHDTVLDN VEPSVPTVGM CFGSAPTVGM CFDSAKAVKT  60
YYRQYAITKG FGIRIRSSKK GVDNEIRYFM LVCSREGKYV SPIPTEIKTL PTQANECQAR  120
ITVGRKEGKW YIMSVIDEHS HDLSPTKSRL FCGNRKLKLK RNLEKNDDVG VRINKSFQSL  180
ASVAGGYDSQ GFVEGDVRKY VGKQRHALGK DGDGKALLSH FLRMRELNKD FFFDIDIDDE  240
NRIRNFFWAD ARSRAACYDF GDIVSFDTTY LINKYDMPFT PFLGVNHHGQ YILLGCALLS  300
SEDTNTFVWL FECWLRCMSY KAPQGIVTDQ CKAIKNAISV VFPQTHHRWC LWHIMKKIPE  360
KLQGYGEYKE IKHAMKVVVY ETMIVDEFEC EWGKFINTFG LMNDEWLGTL YDERHRWVPC  420
YLKNNFWAGM STTQRSKSMN AFFDGYINST TTLQQFLLQY DNALQHKAEK EYEADFASLN  480
TVIPCGSQSL IERQFQTEYT HAKFGEVQTE FRGKMNCVVQ NVVVNGDVCR YDVMEEFIHN  540
GHSRDRLYIV CYDRDNHNVN CNCLLFEFKG ILCRHCLVVL AQERQKQVPA KYVLIRWSKN  600
VRRKHTYIKA SYNITDKEPH IKRYDALCKK FSEIAQVACE KPETTELLFQ HLHTFSTLHA  660
LPGPTTTQHI NGGQLDINAL DSTPQSNDAS NLTVYPEIRS LVAVQRKGQP RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160NRKLKLKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G093300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134998.10.0hypothetical protein PHAVU_010G093300g
TrEMBLV7AMX90.0V7AMX9_PHAVU; Uncharacterized protein
STRINGXP_007134998.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-112FAR1 family protein