PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G089100.1
Common NamePHAVU_010G089100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 417aa    MW: 45337.6 Da    PI: 10.4399
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G089100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.61.6e-36147243289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  +++ +  + ++s +   
  Phvul.010G089100.1 147 PQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGTLKIPTTSPSDPelg 237
                         57999***********************************************************777774442122222222212222222 PP

                 TCP  89 .....k 89 
                              k
  Phvul.010G089100.1 238 dpperK 243
                         222211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-31152267IPR005333Transcription factor, TCP
PROSITE profilePS5136927.141153207IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGPITCNSPT LHGSIKNERT FICIYKVIHG KHKQGPHTNR TTFSFSFLNS FLTIYTFILT  60
THYHSYSNTT FYLIPTTLFF FFSSSFSFCQ HMAHQSSRDV DLRLGEPKGP KLEPETEEAS  120
AIRVMPVAVH VPSISMSKAL AQAQAQPQKR ASTKDRHTKV EGRGRRIRMP ATCAARIFQL  180
TRELGHKSDG ETIRWLLEHA EPAIIAATGT GTVPAIAMSV NGTLKIPTTS PSDPELGDPP  240
ERKKRKRPAN SAYVDVNDGA VSVPAGLTSS TKQNTKTTTT TTTTTTTIPQ HTAIPLPQGV  300
VPVWAVPSNA VVPTAGAFFV VPQTASFQQQ PQFFTIARPI SAFVSSMVTP VQLQPTSTSS  360
PANANPSSTT PSSKSPARAT VMAPTTTTTT HMLRDFSLEI YDKQELQFMS RASSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240247ERKKRKRP
2241246RKKRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G089100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134948.10.0hypothetical protein PHAVU_010G089100g
SwissprotO646476e-90TCP9_ARATH; Transcription factor TCP9
TrEMBLV7AMT90.0V7AMT9_PHAVU; Uncharacterized protein
STRINGXP_007134948.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-85TCP family protein