PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G079300.1 | ||||||||
Common Name | PHAVU_010G079300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 449aa MW: 48613.1 Da PI: 6.6894 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ +++ +G+g+W+t +++ g+ R++k+c++rw++yl Phvul.010G079300.1 14 KGAWTAQEDQKLIAYIQNHGTGSWRTLPQKAGLQRCGKSCRLRWFNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+++++++ + lG++ W++Ia++++ Rt++++k++w++yl Phvul.010G079300.1 67 RGKLSPEEEQKIIKLQAVLGNR-WSSIAKHLP-MRTDNEIKNYWNSYL 112 7999******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.299 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.575 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.73E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MGRTPCCSHE ELRKGAWTAQ EDQKLIAYIQ NHGTGSWRTL PQKAGLQRCG KSCRLRWFNY 60 LRPDIKRGKL SPEEEQKIIK LQAVLGNRWS SIAKHLPMRT DNEIKNYWNS YLKRHYEKND 120 VDPSSSKPIS TASSTESKSS ELCMVPSKET VCHGPNATTH QSNHSSLPKS MSSTQLLNKV 180 ASKILASGYL EAIKSYKPVA AGNSNSNSVV KTGTGIEPEN NRDPLVSNMA SSNHSVTSAQ 240 LLNKMATSLP HKVHGLESAK AVFSKLLESS EKGETGSDGS FISSDEIGDS FISSDEGVKM 300 ATSLPHKVHG LESAKAVFSK LLESSEKGET GSDGSFISSD EIGDCLNALS AFQEAPHITK 360 MAGSPSSPSL IFDQVATPSC FSDNNEDNWQ CVSSNYVSFR YCAPSGGGDC SVSELNLGES 420 SSSTSCFLFE NADLGTCDDE ISKYIQYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 11 | 114 | 4 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G079300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134825.1 | 0.0 | hypothetical protein PHAVU_010G079300g | ||||
TrEMBL | V7AMU5 | 0.0 | V7AMU5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007134825.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16999 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-60 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G079300.1 |
Entrez Gene | 18617767 |