PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G078400.1 | ||||||||
Common Name | PHAVU_010G078400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 313aa MW: 35088 Da PI: 8.8343 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99 | 3.3e-31 | 61 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ++R+ Phvul.010G078400.1 61 PRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNMKGLSIAHVKSHLQMFRS 114 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.456 | 57 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-28 | 57 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-14 | 60 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-22 | 61 | 116 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-9 | 62 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGESRVSHCS KTSPSNIDEE ECERHANEDQ SKQNNNGGSS SNSTAEESEK KIRPYIRSKL 60 PRLRWTPDLH LRFIHAVQRL GGQERATPKL VLQLMNMKGL SIAHVKSHLQ MFRSKKVDDR 120 NQVFSNHTSL VEIGDKNIYN LSQLSMLQAY NPSQSSSYSY TNNNYPSYGF GDASFGVYEK 180 LVHIPFDWSN GISQAGSSIS GEQSTSKTRE PKYEFFSFGA CESLFTRFSN VDRTPSNNII 240 QQRAQNLMPM NPTTEMKTLK RKAQDTSLDL NLSLKLNTKM DAEGTKLEDH EAHSNLSLSL 300 CSQSSSSNLS RG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-17 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-17 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-17 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-17 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-17 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-17 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-17 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-17 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G078400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-134 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134813.1 | 0.0 | hypothetical protein PHAVU_010G078400g | ||||
TrEMBL | V7AMH1 | 0.0 | V7AMH1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007134813.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 8e-49 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G078400.1 |
Entrez Gene | 18617758 |