PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G075500.1
Common NamePHAVU_010G075500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 362aa    MW: 39529 Da    PI: 9.7517
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G075500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-16102140747
                         HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Phvul.010G075500.1 102 EEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 140
                         9***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6497145IPR017930Myb domain
CDDcd001671.63E-11101141No hitNo description
SuperFamilySSF466891.95E-12101143IPR009057Homeodomain-like
SMARTSM007171.1E-9101143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-18101142IPR009057Homeodomain-like
PfamPF002497.3E-13102140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MREKRRTRSA MMGGGGERER DNGVGGVIRL KKLGQTTCRA RVRGSLTAAS DAAIHRVVRR  60
RNPIRSDVDP PFKSPRFGLR TRCIKLRGVI YLIVSCHSRI DEEDRIIVAA HAIHGNKWAA  120
IARLLPGRTD NAIKNHWNST LRRRGVELDK IKLESGNFME DASLEKAKAS SEDTLSCGDV  180
SLKSSEGRDV SSVEIMDDKS DGKAQAEGQL HHKVKDPPTL FRPVARVSAF NVYHSYDVIQ  240
PSTSIQRPVP MQGPILQSSR PDMEFCRMLE GICGDQAVPH QCGHGCCAAP NGRKSESSLL  300
GPEFIEFSEP PSFPNFELAA IAADISNLAW LKSGLENSSV KIMGNTSGSA MSNGSRVHIG  360
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-174214457158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-174214457158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G075500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134781.10.0hypothetical protein PHAVU_010G075500g
TrEMBLV7ANA70.0V7ANA7_PHAVU; Uncharacterized protein
STRINGXP_007134781.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.12e-71myb domain protein 1