PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G071300.1
Common NamePHAVU_010G071300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 330aa    MW: 37069.8 Da    PI: 4.9045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G071300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014188210123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k+F++   L  H  +H
  Phvul.010G071300.1 188 YKCETCDKVFRSYQALGGHRASH 210
                         9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.6E-8187261No hitNo description
PfamPF139122.1E-11187212IPR007087Zinc finger, C2H2
SMARTSM003550.012188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
PfamPF139124.7E-11238261IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058239261IPR007087Zinc finger, C2H2
SMARTSM003550.34239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MRSHMMNLPV PLKETEFVPV QLSFEADSSP SQSSSSFYGL RENPKKSFRF ADPEFSFAAE  60
TGSVILQDRE SETESSKNPT RKRSKRAWQL GEPLKKMKLF ENNNKNESAS SASDTTTEEA  120
VAFCLMMLSR DRWKKYDDHK NIQQYDDEVE DDGDNDDEDE EEDDEEKDGF EFEEMKSVKR  180
SNKVRGRYKC ETCDKVFRSY QALGGHRASH KKMKLNSETE FQKTEPELEH VAVAEKKVHE  240
CPVCFRVFGS GQALGGHKRT HVIGSSATTT TATVRTSANV RTSATVSVGA SARVGDSLID  300
LNLPAPMDDD EDISQFDHSA LSDAEFVKQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G071300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134733.10.0hypothetical protein PHAVU_010G071300g
TrEMBLV7AMA60.0V7AMA6_PHAVU; Uncharacterized protein
STRINGXP_007134733.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-49C2H2-like zinc finger protein