PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G056200.1
Common NamePHAVU_010G056200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 373aa    MW: 41021.1 Da    PI: 7.3409
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G056200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.62e-39191267177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +CqvegC++ l + keyhrrh+vC++hskap+v+v gl qrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk++
  Phvul.010G056200.1 191 RCQVEGCHVALVNSKEYHRRHRVCDMHSKAPKVVVLGLVQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSS 267
                         6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-33188253IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.804189266IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-37190268IPR004333Transcription factor, SBP-box
PfamPF031101.2E-30192265IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDFGDATNTN TFTLHTPTKE ETGNNILWYS SWLQQPTSVV STSNSSYISS PHPTTTAEDY  60
AGGDRRPVYG SEGCHVHGDP HLTCLHLGKR HYFEDPNNGD VRNNNNNNNI ATLGKPPVCV  120
GDGVIISGNR HVGGDGVITL GNRHVYGSDG GAGYFSEGND KRARGCYGGA AAAGAGGGGS  180
VKTAAFGTVP RCQVEGCHVA LVNSKEYHRR HRVCDMHSKA PKVVVLGLVQ RFCQQCSRFH  240
VVSEFDDSKR SCRRRLAGHN ERRRKSSHLS VTRSSRQGCA LSLLSFGSSD NWSFHADLST  300
RCSAALRELI AENRAALMTR QQQQQQHQVV YDRDHCHVVP HHDDAVDEEE QEFEEIQPES  360
NYFPQHMFSQ TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-281922651184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G056200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-146AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134547.10.0hypothetical protein PHAVU_010G056200g
SwissprotQ7XT422e-44SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLV7AQP40.0V7AQP4_PHAVU; Uncharacterized protein
STRINGXP_007134547.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-34squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]