PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G054000.1 | ||||||||
Common Name | PHAVU_010G054000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 31175.8 Da PI: 4.8438 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 111 | 161 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Phvul.010G054000.1 111 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 161 69****998.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-22 | 111 | 169 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 111 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-13 | 111 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-37 | 111 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.261 | 111 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 112 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.91E-33 | 112 | 170 | No hit | No description |
PRINTS | PR00367 | 2.4E-10 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MRKRISMESD ADFFNSSATS SSTSTSTSTT TTTTTPSIFI DTNTSSTSSS SSSSLTPSTS 60 STSNSDSCIK EHSKTPQDDS TTPLTSLENE KDSKGCKKRQ RENPSNQNYP TYRGVRMRNW 120 GKWVSEIREP RKKSRIWLGT YPTAEMAARA HDVAALAIKG HSAYLNFPEL AQELPRPATT 180 SPKDIQAAAA KAANTSFELV KHCQIEDEEE GEEPNQAEHA SSSTLSMDNT QESSSSHSTN 240 DDDTLFDLPD LFPDQLCSYS SSWHLCAVGS GFRLEESLFW ENY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 112 | 168 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G054000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134514.1 | 0.0 | hypothetical protein PHAVU_010G054000g | ||||
Swissprot | Q8LBQ7 | 4e-63 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | V7APH5 | 0.0 | V7APH5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007134514.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 5e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G054000.1 |
Entrez Gene | 18617503 |
Publications ? help Back to Top | |||
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