PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.010G032600.2

Common Name

PHAVU_010G032600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 178aa MW: 19995.9 Da PI: 8.4982

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.010G032600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.2	8.6e-26	70	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+ +++r++ r gC+a++ vk +k gkw+vtk+++eH+H l+ Phvul.010G032600.2 70 NFYDEYARQEGFVVRLDRCHRSEVDNRIISRRFSCNKQGFHVRVRNKTKPVHKPRTSIREGCEAMMLVKVNKCGKWVVTKFVKEHSHLLN 159 6*****************************************9999*************************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-23	70	159	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
HTPSLLNFLT LSSTNLTLLA HNPVLISMDL EAVAETVENC TDKISAAFEG SSIVEPNVGM 60 EFDSEEAAKN FYDEYARQEG FVVRLDRCHR SEVDNRIISR RFSCNKQGFH VRVRNKTKPV 120 HKPRTSIREG CEAMMLVKVN KCGKWVVTKF VKEHSHLLNA SGSPSYSKMI VSFIFNS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.010G032600.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007134266.1	1e-130	hypothetical protein PHAVU_010G032600g, partial
TrEMBL	V7ALY7	1e-129	V7ALY7_PHAVU; Uncharacterized protein (Fragment)
STRING	XP_007134265.1	1e-125	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-40	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Phvul.010G032600.2
Entrez Gene	18617284