PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.010G032600.1

Common Name

PHAVU_010G032600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 227aa MW: 25965.6 Da PI: 8.137

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.010G032600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.6e-25	70	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+ +++r++ r gC+a++ vk +k gkw+vtk+++eH+H l+ Phvul.010G032600.1 70 NFYDEYARQEGFVVRLDRCHRSEVDNRIISRRFSCNKQGFHVRVRNKTKPVHKPRTSIREGCEAMMLVKVNKCGKWVVTKFVKEHSHLLN 159 6*****************************************9999*************************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-22	70	159	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
HTPSLLNFLT LSSTNLTLLA HNPVLISMDL EAVAETVENC TDKISAAFEG SSIVEPNVGM 60 EFDSEEAAKN FYDEYARQEG FVVRLDRCHR SEVDNRIISR RFSCNKQGFH VRVRNKTKPV 120 HKPRTSIREG CEAMMLVKVN KCGKWVVTKF VKEHSHLLNA SGSPSYSKMI ESKDRIIQQL 180 TKELEYRDRL CQQYRRQLFS LLETVEEQTE SLSKNVELVV NNIKNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.010G032600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007134265.1	1e-168	hypothetical protein PHAVU_010G032600g, partial
TrEMBL	V7AL66	1e-167	V7AL66_PHAVU; Uncharacterized protein (Fragment)
STRING	XP_007134265.1	1e-168	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	7e-56	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Phvul.010G032600.1
Entrez Gene	18617284