PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G011600.1 | ||||||||
Common Name | PHAVU_010G011600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARF | ||||||||
Protein Properties | Length: 694aa MW: 77184.6 Da PI: 6.0072 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.9 | 2.2e-24 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + Phvul.010G011600.1 127 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--R 215 99****************************977777888*************************************************..3 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Phvul.010G011600.1 216 GDNGELRVGVRR 227 489999****98 PP | |||||||
2 | Auxin_resp | 94.6 | 1.5e-31 | 253 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ v+++++a+++k+ vGmRfkm+fe++ds+e +r+sGt+vg++d++p +W+nSkWrsLk Phvul.010G011600.1 253 ASHAVATQTLFVVYYKPRT--SQFIIGVNRYLEAVSTKFGVGMRFKMRFEGDDSAEtdKRFSGTIVGIEDISP-HWENSKWRSLK 334 789***************6..9********************************9833577**********99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-39 | 118 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-40 | 118 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.92E-21 | 125 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.28 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-22 | 127 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-22 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-29 | 253 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.9E-13 | 560 | 667 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.455 | 582 | 663 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 8.5E-13 | 584 | 658 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MLSRASNVSA EVVGWGEGED ELYEQLWKAC AGPLVDVPRA GQRVFYFPQG HMEQLEASTN 60 QELNQRIPLL QLPTKILCRV VNVHLLAEQE TDEVYAQITL VPESNQDEPT SADTCTAEAP 120 RAPAHSFCKV LTASDTSTHG GFSVLRKHAT ECLPALDMSQ PTPTQELVAK DLHGYEWRFK 180 HIFRGQPRRH LLTTGWSTFV TSKRLVAGDT FVFLRGDNGE LRVGVRRLAR QASSMPSSVI 240 SSQSMHLGVL ATASHAVATQ TLFVVYYKPR TSQFIIGVNR YLEAVSTKFG VGMRFKMRFE 300 GDDSAETDKR FSGTIVGIED ISPHWENSKW RSLKVQWDEL AAVPRPERVS PWEIEPFIAS 360 ASTPSVQPTI VKTKRPRPSS EVPDVDTTSA ASVFWDTDLP QPDTTQINVL AESKQNDKTG 420 SWHHMQTDMN SKSNSNNTML RNQTEGSWLS SPHSSCPSHL FQDTTDDSKS VSGWPVSKPH 480 SSRLSNEHVL DQVDKENKVE TAASYRLFGI DLIDHSRNSP AVEKASPHAV NVAKVTTEGC 540 TSTLSQTDAG HMSEVPNSSS KERKQEQQQV SPKETQSKQV CRSRTKVQMQ GVAVGRAVDL 600 TILDGYDKLI NELEEMFDIK GQLQYRNKWE IVFTDDEGDM MLVGDDPWPE FCSMVRRIFI 660 CSSQDVKKMC CGSKLPISSV EDGTVISSET TET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-167 | 5 | 357 | 3 | 355 | Auxin response factor 1 |
4ldw_A | 1e-167 | 5 | 357 | 3 | 355 | Auxin response factor 1 |
4ldw_B | 1e-167 | 5 | 357 | 3 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 373 | 377 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G011600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134010.1 | 0.0 | hypothetical protein PHAVU_010G011600g | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | V7AKC7 | 0.0 | V7AKC7_PHAVU; Auxin response factor | ||||
STRING | XP_007134010.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G011600.1 |
Entrez Gene | 18617062 |