PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G254500.1

Common Name

PHAVU_009G254500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

CAMTA

Protein Properties

Length: 912aa MW: 102773 Da PI: 7.2514

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G254500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.4	1.7e-50	31	146	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 + k+rwl+++ei+a+L n++ +++ +++ + p+sg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+ +npt Phvul.009G254500.1 31 EAKSRWLRPNEIHAMLSNHKYFKINAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPT 121 459************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 f rrcywlL+++le+ivlvhy+e+k Phvul.009G254500.1 122 FVRRCYWLLDKSLEHIVLVHYRETK 146 ********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.969	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.8E-72	29	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.6E-45	31	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.0E-6	335	450	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.03E-15	361	448	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	7.15E-17	536	659	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.8E-6	539	626	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.28E-14	546	656	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.3E-14	546	659	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.69	564	629	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.9E-5	597	626	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.114	597	629	IPR002110	Ankyrin repeat
SMART	SM00248	2100	636	667	IPR002110	Ankyrin repeat
SMART	SM00015	5.0E-4	783	805	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.127	784	808	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.8E-4	785	805	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	860	882	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	862	890	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MAHDLTGQLV SSEIHGFHTL QDLEVTNTME EAKSRWLRPN EIHAMLSNHK YFKINAKPVH 60 LPESGTIVLF DRKMLRNFRK DGHNWKKKSD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP 120 TFVRRCYWLL DKSLEHIVLV HYRETKEIQL QSSPVTPVNS NSNSSSVSDP AASWIPSEDL 180 DSGTKSDYSP ELNVNLTVRS YEQKLHEINT LEWDDLVVSN ANTSTTSSGG NVPRSNNQNQ 240 SLLSGNFGNA SSTPSAEVPS LGNITHSVSG SNGVPYGFSE TINLLKNSPT SPCGVDTLGT 300 LVNEGLQSQD SFGMWMNNII SDKPCSMDES ALETSISSVH EPYSSLVADN QLSSLPDQVF 360 NLTEVSPAWA SSTEKTKVLV TGYFHSNYQH LAKLNLVCVC GDVSFPVEIV QVGVYRCWVP 420 PHSPGLVNIY LSFDGHKPIS HVVNFEYRTP ILHDPTAAME EKYNWNEFRL QMRLAHLLFS 480 TDKTLDIFSS VVSPNAVKEA RRFSFKTSFI SKSWQYLLKS IDDKTTPFSQ VKDSLFEIAL 540 KNKLKEWLLE RIIVGCKSTE YDAQGQGVIH LCAVLGYDWA ITLFSWSGLS LDFRDKFGWT 600 ALHWAAYYGM EKMVATLLSA GARPNVVTDP TPQNPGGCTA ADLAFMNGFD GLAAYLSEKS 660 LVEQFNDMSL AGNLSGTLET ALTDPVNTED LTEDQMYLKD TLAAYRVAAG AAARIQAAYR 720 EHSLNLKYKA VEFSSPEDQA RHIVAAMRIQ HAFRKYETRR SNAAAVRIQH RFLTRKHRRE 780 FLNMRRQAIK IQAAFRGFQV RRQYKKIIWS VGVLEKAILR WRLKRKGFRG LQVNSAEDGK 840 QEEGAEEDFF RTGLKQAEER VERSVVRVQA MFRSKKAQEE YRRMKLAYSQ AKLDLEVEDF 900 ISSEVDLLSD I*

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MAHDLTGQLV SSEIHGFHTL QDLEVTNTME EAKSRWLRPN EIHAMLSNHK YFKINAKPVH  60
LPESGTIVLF DRKMLRNFRK DGHNWKKKSD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP  120
TFVRRCYWLL DKSLEHIVLV HYRETKEIQL QSSPVTPVNS NSNSSSVSDP AASWIPSEDL  180
DSGTKSDYSP ELNVNLTVRS YEQKLHEINT LEWDDLVVSN ANTSTTSSGG NVPRSNNQNQ  240
SLLSGNFGNA SSTPSAEVPS LGNITHSVSG SNGVPYGFSE TINLLKNSPT SPCGVDTLGT  300
LVNEGLQSQD SFGMWMNNII SDKPCSMDES ALETSISSVH EPYSSLVADN QLSSLPDQVF  360
NLTEVSPAWA SSTEKTKVLV TGYFHSNYQH LAKLNLVCVC GDVSFPVEIV QVGVYRCWVP  420
PHSPGLVNIY LSFDGHKPIS HVVNFEYRTP ILHDPTAAME EKYNWNEFRL QMRLAHLLFS  480
TDKTLDIFSS VVSPNAVKEA RRFSFKTSFI SKSWQYLLKS IDDKTTPFSQ VKDSLFEIAL  540
KNKLKEWLLE RIIVGCKSTE YDAQGQGVIH LCAVLGYDWA ITLFSWSGLS LDFRDKFGWT  600
ALHWAAYYGM EKMVATLLSA GARPNVVTDP TPQNPGGCTA ADLAFMNGFD GLAAYLSEKS  660
LVEQFNDMSL AGNLSGTLET ALTDPVNTED LTEDQMYLKD TLAAYRVAAG AAARIQAAYR  720
EHSLNLKYKA VEFSSPEDQA RHIVAAMRIQ HAFRKYETRR SNAAAVRIQH RFLTRKHRRE  780
FLNMRRQAIK IQAAFRGFQV RRQYKKIIWS VGVLEKAILR WRLKRKGFRG LQVNSAEDGK  840
QEEGAEEDFF RTGLKQAEER VERSVVRVQA MFRSKKAQEE YRRMKLAYSQ AKLDLEVEDF  900
ISSEVDLLSD I*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G254500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007138978.1	0.0	hypothetical protein PHAVU_009G254500g
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	V7AZ92	0.0	V7AZ92_PHAVU; Uncharacterized protein
STRING	XP_007138978.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Phvul.009G254500.1
Entrez Gene	18621293

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]