PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G240800.1
Common NamePHAVU_009G240800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 126aa    MW: 14314.9 Da    PI: 4.8823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G240800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-181363255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +g++ AeIrdp++      r +lg+f+taeeAa+a+++a+  l+g
  Phvul.009G240800.1 13 KYRGVRKRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIGLRG 63
                        8********.**********97744...688*******************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-111363IPR001471AP2/ERF domain
PROSITE profilePS5103223.3141371IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-221373IPR016177DNA-binding domain
CDDcd000181.11E-301372No hitNo description
Gene3DG3DSA:3.30.730.105.9E-301373IPR001471AP2/ERF domain
SMARTSM003802.1E-321377IPR001471AP2/ERF domain
PRINTSPR003677.0E-111425IPR001471AP2/ERF domain
PRINTSPR003677.0E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEKERSSGDE EVKYRGVRKR PWGKFGAEIR DPTKPTGRQW LGTFDTAEEA ARAYDRAAIG  60
LRGALAILNF PDEYYSHLPF VFSNSSTKDN GSSFAMKEVI EFEYLDNKVL EDLLEIEEKR  120
RNSGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2951096114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G240800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-133AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138829.11e-87hypothetical protein PHAVU_009G240800g
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV7B1T22e-86V7B1T2_PHAVU; Uncharacterized protein
STRINGXP_007138829.14e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]