PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G236200.1 | ||||||||
Common Name | PHAVU_009G236200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 713aa MW: 81544.4 Da PI: 8.5361 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.2e-10 | 501 | 543 | 11 | 53 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e L ++F++n p ++ +e L+k+lgL+ ++V+ WF+N R+ Phvul.009G236200.1 501 AVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARY 543 5789*************************************97 PP | |||||||
2 | PHD | 39.8 | 1.1e-13 | 235 | 290 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+++fH+ Cl+++l++e++p g w+C+ C++k Phvul.009G236200.1 235 FCANCKLheAFPDNDIILCDgTCNRAFHQRCLNPPLDTENIPPGdqGWFCKFCECK 290 699999954445********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.88E-14 | 227 | 292 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.9E-12 | 232 | 291 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.558 | 233 | 290 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 3.48E-29 | 235 | 287 | No hit | No description |
Pfam | PF00628 | 1.1E-10 | 235 | 290 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 3.8E-9 | 235 | 288 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 236 | 287 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 482 | 542 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.143 | 488 | 548 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-6 | 490 | 552 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.76E-9 | 491 | 556 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.94E-7 | 496 | 543 | No hit | No description |
Pfam | PF00046 | 2.5E-7 | 501 | 543 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MRDAENLNKK GSIKSCYSKE QIKSKLLSSK LKTSSTKHRK KEHKEKSRSH KYRVGTNRSK 60 KRVVDSSIKA PLEDSSNKRV IIRKTLHKTD GNSSRMVSST RLQGRKNPHS SRKEGNGVDE 120 EAKIKKRKSS KKKNSQRDNM DHDDASRLKR RTRYLLIKMK LEQNLIDAYS GEGWKGQSRE 180 KIRPEKELLR AKKQILNCKL SIRDVIRQLD SLSSVGSIED SVIAPDGSVY HEHIFCANCK 240 LHEAFPDNDI ILCDGTCNRA FHQRCLNPPL DTENIPPGDQ GWFCKFCECK IEIIESTNAH 300 LGTQFSLDSS WQDVFKEEAA MPDGDIALLN PEEEWPSDDP EDDDYNPERK EDSHSINTEG 360 ADENSSNDST SSSSLWPLNG ECPPVDEDLS HEYYSVNSFI DSDESGEIAC GRRQRKAVDY 420 KKLYDEMFGK DAPPCEQVSE DEDWGPGKRK RREKESDAVN TLMTLHESEN KYHNNESNDR 480 IREGSSGLQI RRSCFRIPLD AVEKLRQVFA ENELPPRSVK EGLSKELGLD PEKVSKWFKN 540 ARYLALKTRK YESEEQLQSS TSQISKDSTS PNMQKDELLE PEVPKITLMH SQKDGQNITG 600 QEKNKLSNSL LKKRKKKPSP PLSRENSNKD SMEMSDDVNL KKLLKERKRR VNFTYEGDSE 660 VAELEFERLS KVKSKVDSMK QKLSEVQYCR AKGSNEPSII YVPTAQLREK VD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 448 | 453 | RKRREK |
2 | 610 | 617 | LKKRKKKP |
3 | 611 | 615 | KKRKK |
4 | 643 | 649 | LKERKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G236200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138774.1 | 0.0 | hypothetical protein PHAVU_009G236200g | ||||
Swissprot | P48785 | 1e-157 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | V7B1M8 | 0.0 | V7B1M8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138774.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-153 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G236200.1 |
Entrez Gene | 18621106 |
Publications ? help Back to Top | |||
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