PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G232700.1
Common NamePHAVU_009G232700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 307aa    MW: 34340 Da    PI: 10.0046
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G232700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.6e-20166200135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+ C+ttkTplWR+gp g+k+LCnaCG+++rk+++
  Phvul.009G232700.1 166 CVDCHTTKTPLWRSGPKGPKSLCNACGIRQRKERR 200
                         ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.9E-18160211IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.756160196IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-12163200No hitNo description
Gene3DG3DSA:3.30.50.102.7E-16164199IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.13E-14165197No hitNo description
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17166200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MIPTYRYSVS SPMLIDLNEE DHTHKQPSSL STSILFNPDQ DQGGFCYWES KHFQSDEEAQ  60
KIVPSSGSWD HPVEKIENRS DLKLRVWKKE EGCDNLKGED SSTMSSKMRM VRKMIVSDET  120
DSDIADISSS KQIKYKKKNP ELSPLVTDDS NCNSSSNQNS VPLRVCVDCH TTKTPLWRSG  180
PKGPKSLCNA CGIRQRKERR AIAAAATTAN GSNRLKAEKS EMKKGKKLHS KGKKSKTEGA  240
PALLKKKRKP AKNRKRFRAF EDLTVRLSNN SAVQQVFPQD EKEAAILLMA LSHGLLHGFP  300
SDLYIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243249LKKKRKP
2244249KKKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G232700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150356e-66AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138732.10.0hypothetical protein PHAVU_009G232700g
TrEMBLV7B2Q00.0V7B2Q0_PHAVU; Uncharacterized protein
STRINGXP_007138732.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-17GATA family protein