PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G219200.1
Common NamePHAVU_009G219200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 1032aa    MW: 113968 Da    PI: 7.0258
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G219200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71.1e-40147224178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Phvul.009G219200.1 147 VCQVEDCRADLSSAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 224
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-32144209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.094145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.2E-37146226IPR004333Transcription factor, SBP-box
PfamPF031105.1E-29148221IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.205.4E-6802913IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.93E-7802916IPR020683Ankyrin repeat-containing domain
CDDcd002041.68E-7803913No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MEAQLEGKNQ YLYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTATQLNSV PSDCRSRQPF  60
PADPEILAIG GASNNLSSAH DDVNLAEGRR ELEKRRRGVA DEGGVEMNDG AGSLNLNLGV  120
QVYPIIEGEE KSGKKTKITG STLNRAVCQV EDCRADLSSA KDYHRRHKVC DMHSKASKAL  180
VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTHPDASVVN DGSVNEEKGS  240
SYLLMSLLRI LSNMHSNGSD NMTSQDVLSH LLRNLASVAG TINGRNIVSL LEGSQDLVKA  300
GTSGTAHNVP NTNSSGPETS RPFDTSTKMD NGLISQDPPE SMVQCEMTPA NGMTKRFIAS  360
GSDGVGSSKY PSLPQPSNVL LSQDSLPPHS VSAEPTVGRI GLSNIDLNSA YDDVQDYVEN  420
TRNSRPPLPS GNGSLDHPLW VQCDSLKSSP PQTSRNSDST STQSPSSSSG EAQSRTDRIV  480
FKLFGKAPND FPHALRSQIL NWLSHSPTEI ESYIRPGCII LTVYLRLENS AWEELCYNLG  540
SSLRKLATPN DSFWRTGWIY TRVQHSVAFL YNGQVVIDVP LRFKSPQNCQ IFCVKPLAVS  600
SSSCVQFIVK GFNLLLSNTR LLCALEGKYL VQESCYDLVD ADAAIGRHEL QHLSFSCCIP  660
NVAGRGFIEV EDNGLSSCSF PFIVAEQEIC SEICKLENVI ETAETADDIQ MKTKRMEEKT  720
QALYFIQEMG WLLHRNRMKV RLGPVAPVQD CFHFNRFMWL VGFSMDHDWC AVMKKLLNII  780
FEDTVDIGEH TSVELALLEM DLLHKAVKRN CRPMVELLLK FVPVNASDGG NSKEQQVSKS  840
PNRFIFRPDS VGPAGLTPLH VAASIHGSDN VLDALTDDPG LVGIEAWKSA QDTTGLTPYD  900
HASLRGHYSY IQLVQRKISN TCKSEHVLNI PGTLVDSNIK QKQSDGHKSS KVSSLQTEKI  960
ETTAMLRHCG LCQHKLAYGG VKTALVYRPA MLSMVAIAAV CVCVALLFKS SPKVYYVFQP  1020
FSWESLEYGS M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-301472211084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216222KRRRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G219200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138555.10.0hypothetical protein PHAVU_009G219200g
TrEMBLV7AY860.0V7AY86_PHAVU; Uncharacterized protein
STRINGXP_007138555.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1