PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G202200.1
Common NamePHAVU_009G202200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 375aa    MW: 41190.2 Da    PI: 9.814
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G202200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.24.6e-2851133366
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................s 66 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ +                   +
  Phvul.009G202200.1  51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVIDWLLEATKLDIDKLPPLqfpqgfgqfhhpqtllpfhD 133
                         79*************************************************************55555554433333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-2652166IPR005333Transcription factor, TCP
PROSITE profilePS5136928.63552110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMMMASSREG QQAKQEGGPI NIDKFSKASS STKQWTAFRN PRIVRVSRSF GGKDRHSKVC  60
TIRGLRDRRI RLSVPTAIQL YDLQDKLGLN QPSKVIDWLL EATKLDIDKL PPLQFPQGFG  120
QFHHPQTLLP FHDSTASQLS LGPFGDASST FVRDGGVQNV MAKSRYWESV DSISRLKGKE  180
AEKGKWVKTN EQENHEDDVV GSYSNLHAST QRLFPMGSGT TTTHSLLPGL LNNTMPYNPY  240
NADPSSLSLS QFGGHGLFPS QQVDPGPSTG NGVQFPSSLP LPSSASQFFF GSSSATPSMF  300
TTYAPFLTPS VDNDPRQFNH IQFLNSGSQI LPHPLIPSLH SFNSYVRPFP ATPFSSKLLE  360
SDSIRSQHDK GSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1857111155Putative transcription factor PCF6
5zkt_B3e-1857111155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G202200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138359.10.0hypothetical protein PHAVU_009G202200g
TrEMBLV7B0F50.0V7B0F5_PHAVU; Uncharacterized protein
STRINGXP_007138359.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-51TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5