PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G200600.1 | ||||||||
Common Name | PHAVU_009G200600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TCP | ||||||||
Protein Properties | Length: 352aa MW: 40629.4 Da PI: 8.3421 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.7 | 2.1e-38 | 110 | 258 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.....eaes 77 gk+drhski T++g+RdRR+Rls+++a+ fF Lqd+LGf k+skt+eWL++qak +i l++ +ss+ sec + ++ Phvul.009G200600.1 110 GKRDRHSKINTARGLRDRRMRLSLDVAKSFFGLQDMLGFEKASKTVEWLMNQAKVEINRLAKEkrkqkknvhhsCSSAGSECeegvsSVDE 200 89*************************************************************7777666655544444666544432222 PP TCP 78 ssssasnsssg......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 ++s + + +++k ++ + k +++ ++++ lake r++ar+rarertrek r + Phvul.009G200600.1 201 VVVSRD----EeqageeREEKVTKRRVKLSRKISAFHPLAKECRERARERARERTREKIRSR 258 222222....13344555555555666677777779**********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-41 | 110 | 257 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.966 | 111 | 169 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.756 | 237 | 254 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MQSQTSDTFH SHYGNEPISY YDPSFYYTRP FSIDSESNPT SKQENNPDLP PLSFFHFPSP 60 PFEDAQIFLE QHHDFLLHKP LPQDPEPQPV SIALETSAKK SNQIPRKRLG KRDRHSKINT 120 ARGLRDRRMR LSLDVAKSFF GLQDMLGFEK ASKTVEWLMN QAKVEINRLA KEKRKQKKNV 180 HHSCSSAGSE CEEGVSSVDE VVVSRDEEQA GEEREEKVTK RRVKLSRKIS AFHPLAKECR 240 ERARERARER TREKIRSRGL AQESKPCREE TDQHLIQLGS WNPSETGQEF GTKSHIVHPS 300 FNVITEGKQQ SYYPKEHDDD SLVILSKWSP SLIFNEHQFA EFQSLGKPWE A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 253 | RARERARERTREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G200600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138340.1 | 0.0 | hypothetical protein PHAVU_009G200600g | ||||
TrEMBL | V7AXP0 | 0.0 | V7AXP0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138340.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 5e-26 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G200600.1 |
Entrez Gene | 18620734 |