PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G199700.1
Common NamePHAVU_009G199700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 454aa    MW: 49740.1 Da    PI: 7.1208
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G199700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.8e-32245300156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Phvul.009G199700.1 245 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 300
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.02E-17242303IPR009057Homeodomain-like
PROSITE profilePS5129413.355242302IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-28243303IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26245300IPR006447Myb domain, plants
PfamPF002497.9E-7247298IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MASQAESSMD YKPYSYSTLL KSFADQTDQT YKLEDFLSRL EEERLKIDAF KRELPLCMQL  60
LTNAVEASRQ QLQAFRSNQG TRPVLEEFIP IKHPNSQEST EKASNLSDKA NWMTSAQLWS  120
QASEGTKPKS TITSPKESAD TGFSVSPKLA LDNKHRNGGA FLPFSRERNS CQGVGGLPEL  180
ALASSENEME VKNCEDAEKC SKRDNSGKGG NCEGIVDQGK SAATESQTTH TTTTTTNTTG  240
QTHRKARRCW SPDLHRRFVN ALQMLGGSQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH  300
TRRPSPSLHA GAPTPQLVVL GGIWVPPEYA TATAHSGGPS LYGPHPTSHM PPPHYCAGTP  360
VSQEFYNLAP SLSLPPPQDH TLHHHFHMYK TAPQTQSSSE SDVRSGGGRS ESIEDGKSES  420
GSWKGENGER KGLAALRDQE GEDSTGSEIT LRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13245298154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G199700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138330.10.0hypothetical protein PHAVU_009G199700g
SwissprotQ9ZQ851e-129EFM_ARATH; Myb family transcription factor EFM
TrEMBLV7AXN00.0V7AXN0_PHAVU; Uncharacterized protein
STRINGXP_007138330.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-128G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]