PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G186600.1
Common NamePHAVU_009G186600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 481aa    MW: 52892.5 Da    PI: 6.2694
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G186600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-39144204262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         ++k+l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s 
  Phvul.009G186600.1 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 204
                         7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-29141201IPR003851Zinc finger, Dof-type
PfamPF027012.8E-32146202IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.686148202IPR003851Zinc finger, Dof-type
PROSITE patternPS013610150186IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLENKDPAIR LFGQKIAFSG EPDARTIAAV EIAWPPPPMV VVRVAEEEEE EDDDVADSEA  60
EDDENKDKDP PEEVSEKTKE ADLPPNAADC KKTPEGIQNP NTPSIDEESA KSKSNKSEND  120
QTDPTTASAT TTNSQDNNKA LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRYFCKACQR  180
YWTAGGTMRN VPVGAGRRKN KNSASHYRHI TISEALQAAR IDSPNGTHLL KPNGRVLSFG  240
LDPPICDSMA SVLNLAEKKT RNGFHSNEDQ RNKDDDCSSA SSITVSNEES GKSTSQESLM  300
PNNNGFIHHH HHHVPCISTV PWAYPWNSGV PSPPALCPPG FPMSFYPHAF WNIPWFPTHS  360
QNHAAPAPRS PGSGPNSPTL GKHSRDDDVA RQEHLHEEPS RQRNGSVLVP KTLRIDDPSE  420
AAKSSIWATL GIKNECVSGA GMFKGFQSKK DEKDRVVETS PVLRANPAAL SRSLNFHENS  480
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00394DAPTransfer from AT3G47500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G186600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138175.10.0hypothetical protein PHAVU_009G186600g
TrEMBLV7AX810.0V7AX81_PHAVU; Uncharacterized protein
STRINGXP_007138175.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.11e-108cycling DOF factor 3