PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G177100.1
Common NamePHAVU_009G177100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 446aa    MW: 51416.5 Da    PI: 7.0561
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G177100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-15163209148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd +l+++v+q+G + W+ Ia+ ++  R +kqc++rw+++l
  Phvul.009G177100.1 163 KGHWTIEEDGILIQLVEQYGLRKWSHIAKILP-ERIGKQCRERWHNHL 209
                         789*****************************.*************97 PP
2Myb_DNA-binding521.6e-16215257145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ W  eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Phvul.009G177100.1 215 KDTWNCEEDKILIEAHAKIGNK-WAEIAKRLP-GRTENSIKNHWN 257
                         578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.344158213IPR017930Myb domain
SuperFamilySSF466891.26E-30161256IPR009057Homeodomain-like
SMARTSM007171.5E-13162211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-24164214IPR009057Homeodomain-like
PfamPF139215.9E-18166222No hitNo description
CDDcd001673.35E-13166209No hitNo description
PROSITE profilePS5129420.278214264IPR017930Myb domain
SMARTSM007174.6E-15214262IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-21215262IPR009057Homeodomain-like
CDDcd001671.27E-11217260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDIDTLVKES FVPQPLQESC TKDMIPLGNP SSHQLLQEHF HHIDEFQFSV PSSINSTFHA  60
FHNFTFTPSS PNLDVYECKP FVMDNFLYGN SQRNIELDIM VSNQSFLPFT PQQIKHSNFA  120
LPDELSCISS MNYYKGIGVN KNHRSYPTTR RTYKVHKKSN TVKGHWTIEE DGILIQLVEQ  180
YGLRKWSHIA KILPERIGKQ CRERWHNHLR PDIKKDTWNC EEDKILIEAH AKIGNKWAEI  240
AKRLPGRTEN SIKNHWNATK RRQYSKRKCR SKYPRGTLLQ EYIKSLNLDK NPPRDYRRKS  300
CVNYATPMNI KTSTSKATAP ALPQTVFQFC ATECLAPNSD FNVVPDFLFG ENLFEEGCCI  360
DSLLDGVPCV PLENNKIFEG KMQFDGMMEG IKHCDYGGIE CVAGVNMDEN DVERDMALEM  420
LKVEVKNELD LVEMISQINN ETFYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-431622633104C-Myb DNA-Binding Domain
1msf_C1e-431622633104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G177100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138059.10.0hypothetical protein PHAVU_009G177100g
SwissprotQ9S7L23e-87MYB98_ARATH; Transcription factor MYB98
TrEMBLV7AZJ90.0V7AZJ9_PHAVU; Uncharacterized protein
STRINGXP_007138059.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-89myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]