PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G169600.1
Common NamePHAVU_009G169600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 493aa    MW: 53385.4 Da    PI: 4.5621
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G169600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.5e-10159181426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tGtCk+G +CkF+H+
  Phvul.009G169600.1 159 EDCAFYLKTGTCKFGFNCKFNHP 181
                         89********************9 PP
2zf-CCCH29.11.8e-09205227325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         + +C++++r+G Ck+G  CkF+H
  Phvul.009G169600.1 205 QTECKYYLRSGGCKFGKACKFNH 227
                         679******************** PP
3zf-CCCH38.71.6e-12252275326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C++++rtG Ck+G++CkF+H+
  Phvul.009G169600.1 252 EKECHYYMRTGSCKFGANCKFNHP 275
                         679********************9 PP
4zf-CCCH29.31.4e-09385411127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+ ++CkF+H++
  Phvul.009G169600.1 385 PGEPECSYFLKTGDCKFKSNCKFHHPK 411
                         5799*********************96 PP
5zf-CCCH35.51.7e-11433457327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +  C +++r+G+Ck+G+ CkF H+p
  Phvul.009G169600.1 433 QNVCTYYSRYGICKFGPACKFDHPP 457
                         568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-6154183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183155183IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4155182IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-8159181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742202230IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4202229IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7205227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5206229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4208229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263249277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6250276IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5251276IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10252275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4255274IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4384411IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061384412IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-7386411IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5389413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6428455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488430458IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5430457IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-9433457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4435455IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEPSESESVT SPTKDSQLGE PSTPVHPLDH DPQPSDLNHV AQDDAALGGE LEDKLDLKDE  60
GESEDKGSNL EDGGGNLSDE GAAPEGGKGE GSKVDGGGDV VVVDDDDDDC NGGDEGCDWI  120
ENVNESESDK VSGDVEGVDC RDERSSGRAQ QYPLRPEAED CAFYLKTGTC KFGFNCKFNH  180
PLKRKNQAKK DNAGEKEEQE ERSGQTECKY YLRSGGCKFG KACKFNHTRG MSSSASSIVE  240
LNFLGLPIRV GEKECHYYMR TGSCKFGANC KFNHPDPTAG GGDSPSGYGN GSSISLQGVS  300
QSSISSWSSS RPLNESTPFV PVILSANPVV SPQSSEWDGY QAPVYLPERN MHLPSTYVMN  360
NPAMETNVYM HHQKQMQVEE FPERPGEPEC SYFLKTGDCK FKSNCKFHHP KNRIARLPPC  420
SLSDKGLPLR PDQNVCTYYS RYGICKFGPA CKFDHPPPST ISGLDQQSSY TNSASVDVAE  480
NGGVSDGNQL SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G169600.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-158AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137964.10.0hypothetical protein PHAVU_009G169600g
SwissprotQ9STM41e-136C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLV7AZB80.0V7AZB8_PHAVU; Uncharacterized protein
STRINGXP_007137964.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-124C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]