PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G165100.2
Common NamePHAVU_009G165100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 370aa    MW: 40577.3 Da    PI: 8.2869
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G165100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.2e-4172148278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  Phvul.009G165100.2  72 CLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 148
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.70169146IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.3E-3269133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.59E-3870151IPR004333Transcription factor, SBP-box
PfamPF031102.5E-3072145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEHNRFGVY RMEGEFSVDL KLGHVGNSGT ESALAKSKDV AAGAGVSKVA SSPSGSSKRA  60
RAINSTTLTV SCLVDGCNSD LSNCRDYHRR HKVCELHSKS PEVTIGGLKQ RFCQQCSRFH  120
SLEQFDERKR SCRKRLDGHN RRRRKPQPEP HTRPGSFLSN YQGTQLLPFS NPHVYHSSAM  180
MSSPWNGGLV SSSADARLHN QHHHQVHLVD KQDLFLGSSH KEGKQLAFVH GNHPSTGALG  240
NQTLPFPSPS VCHTLLRTSP LSETCGVRSK MFCESLTTTN SVHDTPCALS LLSSSQTHTP  300
GNGLNQMVQP PSMSLMQPLG LSLQDNSNLE SVERVLVPND SDHCSSMYSL GSDGSHCNEA  360
HQLFPFQWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-28721451184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127144RKRSCRKRLDGHNRRRRK
2127145RKRSCRKRLDGHNRRRRKP
3128145KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G165100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137897.10.0hypothetical protein PHAVU_009G165100g
RefseqXP_007137898.10.0hypothetical protein PHAVU_009G165100g
TrEMBLV7AW670.0V7AW67_PHAVU; Uncharacterized protein
TrEMBLV7B0770.0V7B077_PHAVU; Uncharacterized protein
STRINGXP_007137898.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-65SBP family protein