PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G165100.1
Common NamePHAVU_009G165100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 395aa    MW: 43363.4 Da    PI: 7.9128
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G165100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.18.1e-4197173278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  Phvul.009G165100.1  97 CLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 173
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.70194171IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.7E-3294158IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-3895176IPR004333Transcription factor, SBP-box
PfamPF031102.8E-3097170IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDWNLKAASW DLVDVDKASI PNIDSMEEHN RFGVYRMEGE FSVDLKLGHV GNSGTESALA  60
KSKDVAAGAG VSKVASSPSG SSKRARAINS TTLTVSCLVD GCNSDLSNCR DYHRRHKVCE  120
LHSKSPEVTI GGLKQRFCQQ CSRFHSLEQF DERKRSCRKR LDGHNRRRRK PQPEPHTRPG  180
SFLSNYQGTQ LLPFSNPHVY HSSAMMSSPW NGGLVSSSAD ARLHNQHHHQ VHLVDKQDLF  240
LGSSHKEGKQ LAFVHGNHPS TGALGNQTLP FPSPSVCHTL LRTSPLSETC GVRSKMFCES  300
LTTTNSVHDT PCALSLLSSS QTHTPGNGLN QMVQPPSMSL MQPLGLSLQD NSNLESVERV  360
LVPNDSDHCS SMYSLGSDGS HCNEAHQLFP FQWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-28971701184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152169RKRSCRKRLDGHNRRRRK
2152170RKRSCRKRLDGHNRRRRKP
3153170KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G165100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137898.10.0hypothetical protein PHAVU_009G165100g
TrEMBLV7AW670.0V7AW67_PHAVU; Uncharacterized protein
STRINGXP_007137898.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-70SBP family protein