PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G152800.1 | ||||||||
Common Name | PHAVU_009G152900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29320.2 Da PI: 7.5435 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6.1e-53 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtd+elv++yL++k++g+++++ +ikevd+yk++Pw+Lp++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+ Phvul.009G152800.1 7 LPPGFRFHPTDDELVNHYLCRKCAGQPISV-PIIKEVDLYKFDPWQLPEMGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKP 96 79****************************.88***************54445799*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++ g+kk Lvfy+g+apkgekt+W+mheyrl Phvul.009G152800.1 97 IGK--PKALGIKKALVFYSGKAPKGEKTNWIMHEYRL 131 *98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-62 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.467 | 7 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MKGELELPPG FRFHPTDDEL VNHYLCRKCA GQPISVPIIK EVDLYKFDPW QLPEMGFYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGKP KALGIKKALV FYSGKAPKGE 120 KTNWIMHEYR LANVDRSASK KNNNLRLDDW VLCRIYNKKG KIEKFNTGAQ KMEAGVQTES 180 SGSEQVVSAE VRWEREVQSH PKWNDIGLQL ENAFDFEYNY FDNNNLSVDD PFGNVEYQIG 240 HVSPLQDILM EALLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-83 | 2 | 164 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G152800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031208 | 0.0 | KT031208.1 Glycine max clone HN_CCL_154 NAC transcription factor (Glyma04g38560.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007137752.1 | 0.0 | hypothetical protein PHAVU_009G152900g | ||||
Swissprot | Q39013 | 1e-108 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | V7AZU4 | 0.0 | V7AZU4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007137752.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 1e-109 | NAC domain containing protein 102 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G152800.1 |
Entrez Gene | 18620245 |