PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G151000.1
Common NamePHAVU_009G151000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 308aa    MW: 34526.1 Da    PI: 10.431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G151000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161863147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede l+++vkq+G+ +W+ I++++  +R++k+c++rw++ 
  Phvul.009G151000.1 18 RGHWRPSEDETLKKLVKQYGPQNWNFISEYLE-RRSGKSCRLRWYNQ 63
                        899*****************************.************96 PP
2Myb_DNA-binding43.19.9e-1470114147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++T+e++e+l+ ++k  G++ W++Iar ++ g+t++ +k+ ++ +
  Phvul.009G151000.1  70 KKPFTEEDEERLLALHKVKGNK-WAAIARFFP-GKTDNAVKNQFHVL 114
                         689*******************.*********.**********9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8111368IPR017930Myb domain
SMARTSM007171.5E-141766IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2717111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-231971IPR009057Homeodomain-like
PfamPF139211.4E-152181No hitNo description
CDDcd001677.37E-142162No hitNo description
SMARTSM007173.2E-1269117IPR001005SANT/Myb domain
PROSITE profilePS5129414.55669119IPR017930Myb domain
CDDcd001671.00E-972115No hitNo description
Gene3DG3DSA:1.10.10.605.8E-1772117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRASSSNSG ESKKGCSRGH WRPSEDETLK KLVKQYGPQN WNFISEYLER RSGKSCRLRW  60
YNQLDPNIIK KPFTEEDEER LLALHKVKGN KWAAIARFFP GKTDNAVKNQ FHVLMARRKR  120
ERLALSGDTF GHNPLINLNN MQNYKNKGMF ATYVSQKPTL WSTLGASSTI TSCFGISSVV  180
HRDSNVSSSA REKALFDLDH FSCRSPPTVG SSILGSYYSF TAPGLPSVGK VVPLPHKFSN  240
YSYDHRPIDS NKSCKTIKHA RDSSSTLCKF STTLEPLNLK QKGVSFIDFL GVGSSPNHRH  300
NSHHNVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27181187107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G151000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-53AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137729.10.0hypothetical protein PHAVU_009G151000g
TrEMBLV7AYP50.0V7AYP5_PHAVU; Uncharacterized protein
STRINGXP_007137729.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.14e-62myb domain protein 69