PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G130000.1
Common NamePHAVU_009G130000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 20815.9 Da    PI: 9.6146
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G130000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.81.9e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien+snrqvt+skR+ngilKKA+E+SvLCda+v++iif+ +gk++ey+s
  Phvul.009G130000.1  9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYIS 59
                        79***********************************************86 PP
2K-box87.82.1e-2971168198
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yq++sgk l++ak+e+l++e+++Lkke++++q e+Rhl+Ged++sL++keL+ Le++Le++l+ +R+kK e+ ++  ++ +  e++++e n
  Phvul.009G130000.1  71 YQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGVREKKVEVHRMFKRNGKILEEQNKELN 161
                         78999************************************************************************************** PP

               K-box  92 kaLrkkl 98 
                           L++ l
  Phvul.009G130000.1 162 FLLQQHL 168
                         ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002655.07E-40280No hitNo description
SuperFamilySSF554552.35E-36296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.1E-2082161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.43184170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGA SGKMHEYISP  60
STTLIDVLDR YQRASGKTLW DAKHENLSNE IDRLKKENDS MQIELRHLKG EDITSLNYKE  120
LMALEDALEN GLNGVREKKV EVHRMFKRNG KILEEQNKEL NFLLQQHLAL EGVGNMHGQW  180
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-19191183MEF2 CHIMERA
6bz1_B2e-19191183MEF2 CHIMERA
6bz1_C2e-19191183MEF2 CHIMERA
6bz1_D2e-19191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G130000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0899010.0BT089901.1 Soybean clone JCVI-FLGm-3I15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137476.11e-130hypothetical protein PHAVU_009G130000g
SwissprotQ0HA252e-91MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLV7AVY81e-129V7AVY8_PHAVU; Uncharacterized protein
STRINGXP_007137476.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]