PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G118600.1
Common NamePHAVU_009G118600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 116aa    MW: 13076 Da    PI: 10.401
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G118600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.2e-1572108135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCg ++  Tp++Rrgp+g+ tLCnaCGl ++ +g+
  Phvul.009G118600.1  72 CRNCGISSkcTPMMRRGPSGPGTLCNACGLSWANRGV 108
                         ******999************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101710.3971355IPR010402CCT domain
PfamPF062038.4E-101353IPR010402CCT domain
SMARTSM004015.9E-666115IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-967109No hitNo description
Gene3DG3DSA:3.30.50.107.0E-1271108IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.15E-972108No hitNo description
PROSITE patternPS0034407299IPR000679Zinc finger, GATA-type
PfamPF003203.3E-1372108IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MECEYEYGGE SHRAASLSRF RQKRKRRCFA NKIRYRTRQE ATLRVHRSKS QFILSKIQDS  60
AGQDVIHSEI LCRNCGISSK CTPMMRRGPS GPGTLCNACG LSWANRGVFN CNKAD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G118600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137337.11e-81hypothetical protein PHAVU_009G118600g
SwissprotQ9LRH69e-38GAT25_ARATH; GATA transcription factor 25
TrEMBLV7AYK92e-80V7AYK9_PHAVU; Uncharacterized protein
STRINGXP_007137337.14e-81(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-40GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]