PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G106700.1
Common NamePHAVU_009G106700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 989aa    MW: 109276 Da    PI: 4.8437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G106700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.9e-193682148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Phvul.009G106700.1 36 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82
                        799****************************9.************986 PP
2Myb_DNA-binding64.32.3e-2088134148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEde+++d+v+++G++ W+tIa++++ gR +kqc++rw+++l
  Phvul.009G106700.1  88 KGPWSKEEDEIIIDLVNRYGPKKWSTIAQKLP-GRIGKQCRERWHNHL 134
                         79******************************.*************97 PP
3Myb_DNA-binding51.32.6e-16140182145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT+eE++ l++a++ +G++ W+  a+ ++ gRt++ +k++w+
  Phvul.009G106700.1 140 KEAWTQEEELALIRAHQIYGNK-WAELAKILP-GRTDNAIKNHWN 182
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4713182IPR017930Myb domain
SuperFamilySSF466896.68E-163288IPR009057Homeodomain-like
SMARTSM007171.0E-153584IPR001005SANT/Myb domain
PfamPF002492.0E-163682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-253899IPR009057Homeodomain-like
CDDcd001671.93E-143982No hitNo description
PROSITE profilePS5129431.93683138IPR017930Myb domain
SuperFamilySSF466894.12E-3185181IPR009057Homeodomain-like
SMARTSM007171.4E-1887136IPR001005SANT/Myb domain
PfamPF002492.6E-1888134IPR001005SANT/Myb domain
CDDcd001672.39E-1690134No hitNo description
Gene3DG3DSA:1.10.10.603.6E-27100142IPR009057Homeodomain-like
PROSITE profilePS5129421.065139189IPR017930Myb domain
SMARTSM007173.0E-16139187IPR001005SANT/Myb domain
PfamPF002491.5E-14140183IPR001005SANT/Myb domain
CDDcd001671.16E-12142182No hitNo description
Gene3DG3DSA:1.10.10.608.9E-22143189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MEGERTIPAV DGVTDGVQKI RALHGRTTGP TRRSTKGQWT PEEDEILRKA VQRFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEIII DLVNRYGPKK WSTIAQKLPG  120
RIGKQCRERW HNHLNPTINK EAWTQEEELA LIRAHQIYGN KWAELAKILP GRTDNAIKNH  180
WNSSVKKKLD SYLASGLLTQ LQNVPLAGNP NQPIASVSSR LQQSGEDNGP RGTEGDEVSQ  240
CSQESANAGY FSSAREMNSV ALLTGEEYRP NEEPSQASCS EPYYVSLDEV TASLPDISGQ  300
EICTSQFVEQ KYSHNRGNSN NGEGQLDLID LTNISSLEFG QESSQLQNDC MMNVPFQTSV  360
GLGVTTTMRP TSMDSVKPEH VLMSDDECCR ILFSEAISDE CFSSEDYNKG VNMVDLLGGP  420
SFLCPSSLPF VPSVVSSTGD RLMYTAESNR LVESEGQQFV SRTQDNTIYA SDLSRTPCTH  480
RIDNTEMHEP SDVVKDDSKL VPVNNFGCGS DAKSTSYPTD ENSNMHTEQN TGALCYEPPR  540
FPSLDIPFLS CDLVQSGGDM QQEFSPLGIR QFMMSSMNCL TPFRLWDSPS RDDSPDALLK  600
SAAKTFKGTP SILKKRNRDL LSPLSEKRID KKLEIEMTST LIKNFSRLDV MFDDNETLGA  660
DLLPPSSMPK KDSGTSVEDD KENCGQAVRV ERLEEKSKHA ILDDKNSEKD SGDGNSQDKI  720
KQPIAVDSAI ENDVSAAVEI VQQPSGVLVE HDMNDLLMYS PDQVNLKSER VPSLSARTIK  780
NPCSKINSPS VWLKEHERLS VAVTCIHSVS TSGPGENSGD HTGNDGGLET CSIFGGTPFR  840
KSIESPSAWK SPWFINTFLS SPRIDTEITI EDFGYFMSPG DRSYDAIGLM KQINEQTAAQ  900
YASAHAILGN ETPKALPRGK SRNDGDEDRD DIDPNNQHGD HSQSASSALV ERRVLDFSEC  960
GTPVKGDSSK SSAMSFSSPT SYLLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-68361896159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-68361896159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G106700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137183.10.0hypothetical protein PHAVU_009G106700g
TrEMBLV7AU590.0V7AU59_PHAVU; Uncharacterized protein
STRINGXP_007137183.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4