PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G085300.1

Common Name

PHAVU_009G085300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

CO-like

Protein Properties

Length: 311aa MW: 33783.8 Da PI: 7.3513

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G085300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.2	7.8e-09	4	46	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 + C+ +++ ++l+C+ + +lC C ++ H H +v Phvul.009G085300.1 4 KLCDSCKSATATLYCRPDAAFLCGACDSKVHAAnklasrHPRV 46 68*****************************656666667665 PP
2	zf-B_box	24.5	5.6e-08	47	91	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ +++ C+ + lC C +H+ H++vp+ Phvul.009G085300.1 47 ALCEVCEQAPAHVTCKADAAVLCLACDRDIHSAnplasrHERVPV 91 68*****************************66999999999986 PP
3	CCT	70.8	3.4e-24	253	296	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Phvul.009G085300.1 253 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRS 296 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.665	1	48	IPR000315	B-box-type zinc finger
SMART	SM00336	1.1E-13	1	48	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.7E-7	4	46	IPR000315	B-box-type zinc finger
CDD	cd00021	2.19E-8	5	48	No hit	No description
PROSITE profile	PS50119	10.694	44	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.3E-6	47	91	IPR000315	B-box-type zinc finger
CDD	cd00021	7.92E-9	48	91	No hit	No description
SMART	SM00336	2.9E-9	49	91	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.787	253	295	IPR010402	CCT domain
Pfam	PF06203	4.3E-18	253	295	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MASKLCDSCK SATATLYCRP DAAFLCGACD SKVHAANKLA SRHPRVALCE VCEQAPAHVT 60 CKADAAVLCL ACDRDIHSAN PLASRHERVP VVPFYESVHS VKASSPINFL DDHRFFSDAD 120 ADVSTEEAEA ASWLLPNPKT DLNSSQYLFS ESEPVPYIDL DYAVADPKAD PKNSATADGV 180 VPVQSSYEPF AYGYKYNSTT LSQSQSQMSQ SVSSSSMEVG VVPDGNTMSE ISNCSYSKVA 240 AVTVTAQFSA ADREARVLRY REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRSDADP 300 LAGYGVVPSC *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G085300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136923.1	0.0	hypothetical protein PHAVU_009G085300g
Swissprot	Q940T9	1e-108	COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBL	V7ATE1	0.0	V7ATE1_PHAVU; Uncharacterized protein
STRING	XP_007136923.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1302	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-108	CONSTANS-like 4

Link Out ? help Back to Top
Phytozome	Phvul.009G085300.1
Entrez Gene	18619540