PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G084400.1
Common NamePHAVU_009G084400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 268aa    MW: 29419.6 Da    PI: 4.6966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G084400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-182372255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Phvul.009G084400.1 23 VYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALFCLRG 72
                        7*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-112372IPR001471AP2/ERF domain
PROSITE profilePS5103222.0622380IPR001471AP2/ERF domain
SMARTSM003801.2E-312386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-282381IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-202380IPR016177DNA-binding domain
CDDcd000184.28E-292482No hitNo description
PRINTSPR003677.2E-92435IPR001471AP2/ERF domain
PRINTSPR003677.2E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDMDMEKHAV CGGASDSTSE HKVYKGVRKR KWGKWVSEIR LPNSRERIWL GSYDSPEKAA  60
RAFDAALFCL RGRNANFNFP NTPCSMDTNV PLAAPQSLTP HEIQEVAAKF ANEDPLLQKK  120
PLTQESQRDA AAAASASAAA DGNSSSFGAM LCKSDSVAGS SSSTTSTPTT TASSCSTTMH  180
ECDGTVLVGH GDMDWTFLKE FDYSNEVFPV GSDYDLYFEL HKMHSTSGEL LYSTPPPPPP  240
PFDGYQELID AEEDPFYHQS FLWNWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151381473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430KGVRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G084400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136913.10.0hypothetical protein PHAVU_009G084400g
TrEMBLV7ATD00.0V7ATD0_PHAVU; Uncharacterized protein
STRINGXP_007136913.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-43ERF family protein