PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G078300.2
Common NamePHAVU_009G078300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 374aa    MW: 41688.4 Da    PI: 4.6519
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G078300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.6e-36461372102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++++ed+++++++sws+  nsfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++
  Phvul.009G078300.2  46 FLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLAGQRH 127
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+++
  Phvul.009G078300.2 128 LLKTIKRRRH 137
                         *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-3342135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3742135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKGGTVKEEE TTAFAAAAAS SSSSSSTSNL SPQPREGLHD VGPPPFLTKT FDVVEDPSTN  60
DIVSWSRARN SFVVWDSHKF STTILPRYFK HNNFSSFVRQ LNTYGFRKVD PDKWEFANEG  120
FLAGQRHLLK TIKRRRHVAQ TQSHEGGSGA CVELGEFGLE GEIERLMRDR AVLMAEIVRL  180
RQQQHNSREQ LLSIETRLQV SEKKHQQMIT FLAKALNNQT FIQQFLHRNA QKIELQGARR  240
KRRLTASPSV ENLQQDPVID VALPVEEDST TIESLLSAVC DDDPLESSTE FEDPMLNSVP  300
NTDGGSNLGV VSDAIWEDLL NQDLVAGDPE EEVVIGDFSQ VDVPVEDLVA DPDEWSEDLQ  360
NLVDHLGHLA SKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-254413527129Heat shock factor protein 1
5d5v_B6e-254413527129Heat shock factor protein 1
5d5v_D6e-254413527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G078300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136834.10.0hypothetical protein PHAVU_009G078300g
RefseqXP_007136835.10.0hypothetical protein PHAVU_009G078300g
RefseqXP_007136836.10.0hypothetical protein PHAVU_009G078300g
SwissprotP411521e-121HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLV7AU380.0V7AU38_PHAVU; Uncharacterized protein
STRINGXP_007136834.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-108heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]