PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G068000.1
Common NamePHAVU_009G068000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 263aa    MW: 28322 Da    PI: 8.9445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G068000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191156147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l + v+ +G+++W++I++ ++ gR++k+c++rw + 
  Phvul.009G068000.1 11 KGPWSPEEDEALRRFVQIYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 56
                        79******************************.***********985 PP
2Myb_DNA-binding54.13.5e-1765107347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+ Ede +v+a++++G++ W+tIar ++ gRt++ +k++w++ 
  Phvul.009G068000.1  65 PFTAKEDETIVKAHARFGNK-WATIARFLN-GRTDNAIKNHWNST 107
                         89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.425661IPR017930Myb domain
SuperFamilySSF466892.85E-328104IPR009057Homeodomain-like
SMARTSM007172.3E-171059IPR001005SANT/Myb domain
PfamPF002492.1E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-251264IPR009057Homeodomain-like
CDDcd001674.54E-171355No hitNo description
SMARTSM007174.2E-1462110IPR001005SANT/Myb domain
PROSITE profilePS5129420.20163112IPR017930Myb domain
PfamPF002493.2E-1465107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2265111IPR009057Homeodomain-like
CDDcd001679.11E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASAKDMDRI KGPWSPEEDE ALRRFVQIYG PRNWSLISKS IPGRSGKSCR LRWCNQLSPE  60
VEHRPFTAKE DETIVKAHAR FGNKWATIAR FLNGRTDNAI KNHWNSTLKR KCSEPPSDPR  120
PLKRVASGSD SPSGSDLSDS GLPATSPNPI YQPLAGSVSV SLVPSTLLAE TASSSATDIA  180
TLLSLSLPGS NSCNGASNGP GPGPGTNGSE QLLSEELLKV MQDMIRVEVR NYMSGLERNG  240
VFMQNDAIGN AVLKRMGIGM LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-40101123105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-391011257159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-391011257159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-40101123105C-Myb DNA-Binding Domain
1msf_C2e-40101123105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G068000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311881e-143KT031188.1 Glycine max clone HN_CCL_41 MYB/HD-like transcription factor (Glyma04g04490.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136715.10.0hypothetical protein PHAVU_009G068000g
SwissprotO231606e-76MYB73_ARATH; Transcription factor MYB73
TrEMBLV7AT180.0V7AT18_PHAVU; Uncharacterized protein
STRINGXP_007136715.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-68myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]