PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G047000.3
Common NamePHAVU_009G047000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRF
Protein Properties Length: 587aa    MW: 62886.1 Da    PI: 8.5751
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G047000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.7e-25195238144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  Phvul.009G047000.3 195 DPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 238
                         79***************************************998 PP
2QLQ53.47.9e-19138168232
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                         +FT aQ+ +L++Q+++yKy++a++PvPp+Ll
  Phvul.009G047000.3 138 PFTSAQWRELERQAMIYKYMMASVPVPPDLL 168
                         8*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.9E-10137173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.788138173IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-13138168IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.739195239IPR014977WRC domain
PfamPF088792.1E-20196238IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MGEFGLSHTR KRSSSSNNSG GSVVGLDVKL QSPEALFHNK MTMMAHHNHH HRPLSSPFDN  60
DSCAGDGDGP TAYMSFTNHI NLVSGASVLA PAIDGGCGAP APVRTLQPFD ISPYTSPTTT  120
SSTFKPSAGG MAASLGFPFT SAQWRELERQ AMIYKYMMAS VPVPPDLLIH TSLTSSSRSV  180
CMDGGFNLRL ASSTDPEPGR CRRTDGKKWR CSRDVAPNHK YCERHMHRGR PRSRKPVEVN  240
TKTTTPTSIN NNSHQIKRPR HESNPFPSIP DVTVAISNPT SRKHGSSPHF LGSSTTPPYL  300
ESPLSLANFS LKAANFDSMA SVSANKEPRG LEWMLNGDPI SLGASDSEWQ SLMHNKVGLS  360
SESCCNNTQP QFLNSFALYN TGLDQQNRRH PFLNPLIVPM ENLQPEKTRG FIDAWSNTET  420
GENNAATTNN NNKNSAVSIG KLSLSSLDLS KGGGAVNEDL GNVNIGLGLM ESIANTHTDT  480
KISLSNWLNP APWVASTLGG PLAEVLRSST VTATTKTNEA TSNTPSPATT HVESNSPLGT  540
MVSSPSGVLQ KTLVSLSDSS SNSSPTVASS RANSEMTLLR FQPNVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G047000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136460.10.0hypothetical protein PHAVU_009G047000g
TrEMBLV7ASA30.0V7ASA3_PHAVU; Uncharacterized protein
STRINGXP_007136458.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.16e-37growth-regulating factor 7