PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G047000.2
Common NamePHAVU_009G047000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRF
Protein Properties Length: 586aa    MW: 62815 Da    PI: 8.5751
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G047000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.7e-25194237144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  Phvul.009G047000.2 194 DPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 237
                         79***************************************998 PP
2QLQ53.47.8e-19137167232
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                         +FT aQ+ +L++Q+++yKy++a++PvPp+Ll
  Phvul.009G047000.2 137 PFTSAQWRELERQAMIYKYMMASVPVPPDLL 167
                         8*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.9E-10136172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.788137172IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-13137167IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.739194238IPR014977WRC domain
PfamPF088792.1E-20195237IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGEFGLSHTR KRSSSSNNSG GSVVGLDVKL QSPEALFHNK MTMMAHHNHH HRPLSSPFDN  60
DSCAGDGDGP TAYMSFTNHI NLVSGASVLA PAIDGGCGAP APVRTLQPFD ISPYTSPTTT  120
SSTFKPSGGM AASLGFPFTS AQWRELERQA MIYKYMMASV PVPPDLLIHT SLTSSSRSVC  180
MDGGFNLRLA SSTDPEPGRC RRTDGKKWRC SRDVAPNHKY CERHMHRGRP RSRKPVEVNT  240
KTTTPTSINN NSHQIKRPRH ESNPFPSIPD VTVAISNPTS RKHGSSPHFL GSSTTPPYLE  300
SPLSLANFSL KAANFDSMAS VSANKEPRGL EWMLNGDPIS LGASDSEWQS LMHNKVGLSS  360
ESCCNNTQPQ FLNSFALYNT GLDQQNRRHP FLNPLIVPME NLQPEKTRGF IDAWSNTETG  420
ENNAATTNNN NKNSAVSIGK LSLSSLDLSK GGGAVNEDLG NVNIGLGLME SIANTHTDTK  480
ISLSNWLNPA PWVASTLGGP LAEVLRSSTV TATTKTNEAT SNTPSPATTH VESNSPLGTM  540
VSSPSGVLQK TLVSLSDSSS NSSPTVASSR ANSEMTLLRF QPNVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G047000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136459.10.0hypothetical protein PHAVU_009G047000g
TrEMBLV7AV270.0V7AV27_PHAVU; Uncharacterized protein
STRINGXP_007136458.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.16e-37growth-regulating factor 7