PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G047000.1 | ||||||||
Common Name | PHAVU_009G047000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GRF | ||||||||
Protein Properties | Length: 595aa MW: 63726 Da PI: 8.4155 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 6.8e-25 | 203 | 246 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Phvul.009G047000.1 203 DPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 246 79***************************************998 PP | |||||||
2 | QLQ | 53.4 | 8e-19 | 138 | 168 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FT aQ+ +L++Q+++yKy++a++PvPp+Ll Phvul.009G047000.1 138 PFTSAQWRELERQAMIYKYMMASVPVPPDLL 168 8*****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.9E-10 | 137 | 173 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.788 | 138 | 173 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.6E-13 | 138 | 168 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.739 | 203 | 247 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 204 | 246 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MGEFGLSHTR KRSSSSNNSG GSVVGLDVKL QSPEALFHNK MTMMAHHNHH HRPLSSPFDN 60 DSCAGDGDGP TAYMSFTNHI NLVSGASVLA PAIDGGCGAP APVRTLQPFD ISPYTSPTTT 120 SSTFKPSAGG MAASLGFPFT SAQWRELERQ AMIYKYMMAS VPVPPDLLIH TSLTSSSRSV 180 CSMNDPLLSL DGGFNLRLAS STDPEPGRCR RTDGKKWRCS RDVAPNHKYC ERHMHRGRPR 240 SRKPVEVNTK TTTPTSINNN SHQIKRPRHE SNPFPSIPDV TVAISNPTSR KHGSSPHFLG 300 SSTTPPYLES PLSLANFSLK AANFDSMASV SANKEPRGLE WMLNGDPISL GASDSEWQSL 360 MHNKVGLSSE SCCNNTQPQF LNSFALYNTG LDQQNRRHPF LNPLIVPMEN LQPEKTRGFI 420 DAWSNTETGE NNAATTNNNN KNSAVSIGKL SLSSLDLSKG GGAVNEDLGN VNIGLGLMES 480 IANTHTDTKI SLSNWLNPAP WVASTLGGPL AEVLRSSTVT ATTKTNEATS NTPSPATTHV 540 ESNSPLGTMV SSPSGVLQKT LVSLSDSSSN SSPTVASSRA NSEMTLLRFQ PNVN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G047000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007136458.1 | 0.0 | hypothetical protein PHAVU_009G047000g | ||||
TrEMBL | V7AS18 | 0.0 | V7AS18_PHAVU; Uncharacterized protein | ||||
STRING | XP_007136458.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 1e-34 | growth-regulating factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G047000.1 |
Entrez Gene | 18619151 |