PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G035400.1
Common NamePHAVU_009G035400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 277aa    MW: 30488.8 Da    PI: 6.2333
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G035400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.9e-17189225135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Phvul.009G035400.1 189 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRGT 225
                         *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.5875388IPR010399Tify domain
SMARTSM009799.6E-135388IPR010399Tify domain
PfamPF062002.9E-135787IPR010399Tify domain
PfamPF062033.2E-16121163IPR010402CCT domain
PROSITE profilePS5101712.669121163IPR010402CCT domain
SMARTSM004012.2E-16183236IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.528183242IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-12184235No hitNo description
CDDcd002025.57E-17188234No hitNo description
Gene3DG3DSA:3.30.50.104.2E-16188230IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.4E-15189225IPR000679Zinc finger, GATA-type
PROSITE patternPS003440189216IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MYDPMNQIVP AEDNDADASD QHIHYSSHTI EDVGADVEDV SAVSLYVSPP EISVQDSSQL  60
TLSFRGQVYV FDAVTPDKVQ AVLLLLGGSE LTPGSQCAVE LSPQNHTGSV EFPARCSLPQ  120
REASLNRFRQ KRKERCFDKK VRYSVRQEVA LRMHRNKGQF TSSKKQDGAN SWGSDQESGQ  180
EAVQSENSCT HCGTSSKSTP MMRRGPSGPR SLCNACGLFW ANRGTLRDLS KRNQEHSLVP  240
LEQVDVGSNN DLDCRSVIPA QHDNHVNDIK ALVSDR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G035400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968950.0BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136308.10.0hypothetical protein PHAVU_009G035400g
SwissprotQ9LRH66e-89GAT25_ARATH; GATA transcription factor 25
TrEMBLV7ARM10.0V7ARM1_PHAVU; Uncharacterized protein
STRINGXP_007136308.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-91GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]