PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G016300.1
Common NamePHAVU_009G016300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family E2F/DP
Protein Properties Length: 534aa    MW: 60240.8 Da    PI: 6.2122
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G016300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.11.1e-26253318171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL+llt+kf++l++ +++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+i+wkg
  Phvul.009G016300.1 253 RYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEIL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIQWKG 318
                         6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.1E-29250319IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-35253318IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-17253316IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.3E-25255318IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146607.28E-35329436No hitNo description
SuperFamilySSF1440743.14E-25329436No hitNo description
PfamPF164218.0E-24334433IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGVAQEEREA QEEKVGLRQR GPRRESRAER EGGPNRGEGE RKENKRRGGV CIRTQLTAFF  60
ALVLAATQSH LITISHHSLF TQQHISSLLF LPKFIISLSP PFSISLSSCY ITVSLLLLPA  120
LSVSQTLSSL LFSSPLMSTS GEDHHQPHPP PHPSQFKFHL LHSPSHFSPL PHSLFPNFPL  180
SQRYESNNFK SHTSNLEVAP DMSKTVNLPP PVQIEPSVRG KQNGKSKLSR NTKSGTHGPG  240
SDSPNSTAVN NCRYDSSLGL LTKKFVSLIQ DAKDGTLDLN KTAEILEVQK RRIYDITNVL  300
EGVGLIEKTS KNHIQWKGCD GLGPRELEDQ INSLKAEVET LYARECELDD CIRKKQELLR  360
NLEESESSQK YLFLTKEEIL SLPCFQNQEI IAIKAPKASF IEVPDPDEEL VFRQRQYKMI  420
VRSATGPIYL YLLSKDDCKY EDDSVKRVKV TDPSWNSEHY RKRGVGLLES QDDKKNTSES  480
FNFQGSQSSG IQEITPTDFE MEDDYWFQSD PGVRLTELWE NEPLMQIDEL GDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-24253319774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G016300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970030.0BT097003.1 Soybean clone JCVI-FLGm-15J6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136084.10.0hypothetical protein PHAVU_009G016300g
TrEMBLV7ATY80.0V7ATY8_PHAVU; Uncharacterized protein
STRINGXP_007136084.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-89E2F/DP family protein