PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G013900.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26243 Da    PI: 9.7848
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G013900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.5e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s
  Phvul.009G013900.1  9 KRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 59
                        79***********************************************86 PP
2K-box87.72.3e-2971169199
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yq + g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L +L++++L+ Le++++k+ k +R++K++++++qi++++kk ++ +e +
  Phvul.009G013900.1  71 YQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVH 161
                         67788999*********************************************************************************** PP

               K-box  92 kaLrkkle 99 
                         ++L + l+
  Phvul.009G013900.1 162 NRLLRDLD 169
                         **998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.408161IPR002100Transcription factor, MADS-box
CDDcd002656.80E-38280No hitNo description
SuperFamilySSF554551.11E-36395IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1782167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.30884174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMFSS TGKLHEYISP  60
STSTKHFFDQ YQMTLGVDLW NSHYENMQEN LKKLKEVNKN LRKEIRQRMG DCLIDLNMED  120
LKLLEEEMDK AAKVVRERKY KVITNQIDTQ RKKFNNEKEV HNRLLRDLDA RAEDPRFALI  180
DNGGEYESVI GFSNLGPRMF ALSLQPSHPS GHSGPTSDLT TYPLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-16159159MEF2C
5f28_B6e-16159159MEF2C
5f28_C6e-16159159MEF2C
5f28_D6e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G013900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3103030.0AY310303.1 Glycine max MADS-box protein GmNMH7 (NMH7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027902683.11e-168floral homeotic protein DEFICIENS
SwissprotE0CPH41e-110AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A4D6NXC11e-167A0A4D6NXC1_VIGUN; MADS-box transcription factor
STRINGGLYMA06G02990.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]