PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G013700.1

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

SRS

Protein Properties

Length: 354aa MW: 38366.6 Da PI: 8.3068

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G013700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	207.2	4.5e-64	152	293	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 s +++CqdCGnqakkdC+h RCRtCCk+rgf C+thvkstWvpaakrrerqqql+a+++ ++ + e+ +kr++++ ++ +s Phvul.009G013700.1 152 SSGINCQDCGNQAKKDCTHLRCRTCCKTRGFPCQTHVKSTWVPAAKRRERQQQLSALQNPQQ-FRGENIPKRHHRD---------TQLVSA 232 5678************************************************99866554.4455555555543.........333445 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ l+ ++P+evs++avfrcvrvs+vd ++e++aYqt+vsigGhvfkGiLydqG+e+ Phvul.009G013700.1 233 PQPIAGLQLGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVSIGGHVFKGILYDQGPES 293 5666789999***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.5E-61	154	292	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-25	156	198	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-24	243	291	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGKIASETLK IREKKILIYG DETTHPHHIT VQHSQLDMAR HHGNKASLNS SCAAARGGPQ 60 NKEEGEVGKG DSNNNNNGNN LLLFRNEEIY NKGFEIWPES YQPQAAPQNL SNYFAFGVGP 120 SRRNCSEEVS LCVSDESTRF GLTVMRSGGA GSSGINCQDC GNQAKKDCTH LRCRTCCKTR 180 GFPCQTHVKS TWVPAAKRRE RQQQLSALQN PQQFRGENIP KRHHRDTQLV SAPQPIAGLQ 240 LGQFPPEVST SAVFRCVRVS AVDASDEQCA YQTSVSIGGH VFKGILYDQG PESSYTSAAT 300 EGSSGGDPRQ LGLITGAATA TTTSGNHPFD PSLYPAPLNA FMSGTQFFHP PRS*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGKIASETLK IREKKILIYG DETTHPHHIT VQHSQLDMAR HHGNKASLNS SCAAARGGPQ  60
NKEEGEVGKG DSNNNNNGNN LLLFRNEEIY NKGFEIWPES YQPQAAPQNL SNYFAFGVGP  120
SRRNCSEEVS LCVSDESTRF GLTVMRSGGA GSSGINCQDC GNQAKKDCTH LRCRTCCKTR  180
GFPCQTHVKS TWVPAAKRRE RQQQLSALQN PQQFRGENIP KRHHRDTQLV SAPQPIAGLQ  240
LGQFPPEVST SAVFRCVRVS AVDASDEQCA YQTSVSIGGH VFKGILYDQG PESSYTSAAT  300
EGSSGGDPRQ LGLITGAATA TTTSGNHPFD PSLYPAPLNA FMSGTQFFHP PRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G013700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136048.1	0.0	hypothetical protein PHAVU_009G0137001g, partial
Swissprot	Q9LQZ5	5e-73	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	V7AQV4	0.0	V7AQV4_PHAVU; Uncharacterized protein (Fragment)
STRING	XP_007136048.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-65	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Phvul.009G013700.1

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]