PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G004300.1 | ||||||||
Common Name | PHAVU_009G004300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | SRS | ||||||||
Protein Properties | Length: 218aa MW: 23929.7 Da PI: 8.7325 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 88.4 | 1.6e-27 | 14 | 66 | 4 | 56 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqql 56 +++CqdCGnqakk+C+++RCRtCCk++gf+C+th++stW p++krr+ q Phvul.009G004300.1 14 RGSKCQDCGNQAKKECSYSRCRTCCKNKGFKCQTHIRSTWTPVDKRRNTEQPP 66 5679*******************************************975543 PP | |||||||
2 | DUF702 | 75.2 | 1.9e-23 | 93 | 144 | 103 | 154 |
DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P +s+a+frcv+v+s+dd+ +e+aYqt+v+igGhvf+GiLydqG+e+ Phvul.009G004300.1 93 MKFPGAANSMAMFRCVQVRSMDDAVNEVAYQTSVNIGGHVFSGILYDQGPEQ 144 34************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.4E-42 | 15 | 143 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.2E-23 | 17 | 59 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.0E-20 | 94 | 142 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MKRGTQGEEE VVSRGSKCQD CGNQAKKECS YSRCRTCCKN KGFKCQTHIR STWTPVDKRR 60 NTEQPPSPPH NFHGDVPQKH NQINPYSVSG LEMKFPGAAN SMAMFRCVQV RSMDDAVNEV 120 AYQTSVNIGG HVFSGILYDQ GPEQGYNHKG GSSSGLVDEQ QRNNLGLMNN ASIHSRDSSG 180 VTIASAGHGE PLFPPPPYPF PLASFRPGMP YFTYPRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G004300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-120 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007135936.1 | 1e-163 | hypothetical protein PHAVU_009G004300g | ||||
TrEMBL | V7ARI1 | 1e-162 | V7ARI1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007135936.1 | 1e-163 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 7e-43 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G004300.1 |
Entrez Gene | 18618709 |