PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G004200.2
Common NamePHAVU_009G004200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 196aa    MW: 21645.2 Da    PI: 6.1428
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G004200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.71.2e-08442537
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         C+ +++ e++ fC  ++  lC++C  ++H+       H
  Phvul.009G004200.2  4 QCDVCDKMEATVFCPADEAALCRSCDRTIHHAnklatkH 42
                        7******99********************7443666666 PP
2zf-B_box32.12.3e-105692438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        + C+ ++ek++ lfC++++ llC++C l +H+   Ht
  Phvul.009G004200.2 56 PLCDICQEKRAYLFCQEDRALLCRECDLPIHRAneHT 92
                        68*****************************768865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.433147IPR000315B-box-type zinc finger
CDDcd000213.30E-7347No hitNo description
SMARTSM003361.8E-8447IPR000315B-box-type zinc finger
PfamPF006437.8E-6444IPR000315B-box-type zinc finger
SuperFamilySSF578453.66E-55092No hitNo description
SMARTSM003361.7E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.40953100IPR000315B-box-type zinc finger
CDDcd000211.60E-1056100No hitNo description
PfamPF006438.8E-95692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MKIQCDVCDK MEATVFCPAD EAALCRSCDR TIHHANKLAT KHPRFPLIFP TSQDFPLCDI  60
CQEKRAYLFC QEDRALLCRE CDLPIHRANE HTQKHNRFLL TGVKLSATSL DSASSSTNCT  120
DTVTASEGKN GRSRTNRPRS ISHENLTSSW KAEDNVGSDT GSVSTSSISE YLIETIPGYC  180
FEELLDGSFA PTNGF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G004200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-162AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135934.11e-144hypothetical protein PHAVU_009G004200g
SwissprotQ9LQZ78e-60BBX21_ARATH; B-box zinc finger protein 21
TrEMBLV7ATJ71e-143V7ATJ7_PHAVU; Uncharacterized protein
STRINGXP_007135935.11e-143(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-56DBB family protein
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]