PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G293000.1

Common Name

PHAVU_008G293000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 784aa MW: 89949.5 Da PI: 6.3398

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G293000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.5	1.7e-31	76	167	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel+ Phvul.008G293000.1 76 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELV 166 9*************************************998888545677889*********************************8 PP FAR1 91 p 91 p Phvul.008G293000.1 167 P 167 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-30	76	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-32	288	380	IPR018289	MULE transposase domain
Pfam	PF04434	2.5E-11	562	602	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.251	568	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	579	606	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MMDNEVLEFD IGLGGGEGEY DDDGGDIEHP IEEDELGDSS GGGAVATGIY LPEGDLSDLE 60 PSEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA KEGFRNLNEK 120 RTKDREIKRP RTITRVGCKA SLSVKMQDSG KWVVSGFVRE HNHELVPPDQ VHCLRSHRQI 180 SGAAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR QRSLEGDIQL 240 VLDYLRQMHS ENPNFFYAVQ GDEDQSVNNV FWADPKARMN YTFFGDTVTF DTTYRSNRYR 300 LPFAPFTGVN HHGQPVLFGC AFLINESEAS FVWLFKTWLM AMSGRPPVSI TTDHDSVIRS 360 AIIQVFPDTR HRFCKWHIFK KCQEKLSHIF LKYPNFEAEF HKCVNLTESI EEFESCWSTL 420 VDKYDLRDHE WLQAIYSACR QWVPVYLRDT FFAEMSITQR SDSMNSYFDG YINASTNLNQ 480 FFKLYEKALE SRNEKEVRAD YDTMNTLPVL RTPSPMEKQA SELYTRKIFM RFQEELVGTL 540 TFMASKADDD GEVITYNVAK FGEEHKGYYV KFNVLEMKAT CSCQMFEFSG LLCRHVLAVF 600 RVTNVLTLPS HYILKRWTRN AKSNVILEEH SCDVYTYYLE SHTVRYNTLR HEAFKFVDEG 660 AQSAETYDVA MDALQGAAKR VSQAMQNEGR IPISNGKLRS HVLNDESRVN YTSACQEECL 720 SQHTSKDDLD TNIRKLLNEL ECANRKCEIY RSNLLSVLKA VEDHKLQLSV KVENIKISMK 780 DGI*

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MMDNEVLEFD IGLGGGEGEY DDDGGDIEHP IEEDELGDSS GGGAVATGIY LPEGDLSDLE  60
PSEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA KEGFRNLNEK  120
RTKDREIKRP RTITRVGCKA SLSVKMQDSG KWVVSGFVRE HNHELVPPDQ VHCLRSHRQI  180
SGAAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR QRSLEGDIQL  240
VLDYLRQMHS ENPNFFYAVQ GDEDQSVNNV FWADPKARMN YTFFGDTVTF DTTYRSNRYR  300
LPFAPFTGVN HHGQPVLFGC AFLINESEAS FVWLFKTWLM AMSGRPPVSI TTDHDSVIRS  360
AIIQVFPDTR HRFCKWHIFK KCQEKLSHIF LKYPNFEAEF HKCVNLTESI EEFESCWSTL  420
VDKYDLRDHE WLQAIYSACR QWVPVYLRDT FFAEMSITQR SDSMNSYFDG YINASTNLNQ  480
FFKLYEKALE SRNEKEVRAD YDTMNTLPVL RTPSPMEKQA SELYTRKIFM RFQEELVGTL  540
TFMASKADDD GEVITYNVAK FGEEHKGYYV KFNVLEMKAT CSCQMFEFSG LLCRHVLAVF  600
RVTNVLTLPS HYILKRWTRN AKSNVILEEH SCDVYTYYLE SHTVRYNTLR HEAFKFVDEG  660
AQSAETYDVA MDALQGAAKR VSQAMQNEGR IPISNGKLRS HVLNDESRVN YTSACQEECL  720
SQHTSKDDLD TNIRKLLNEL ECANRKCEIY RSNLLSVLKA VEDHKLQLSV KVENIKISMK  780
DGI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G293000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007142582.1	0.0	hypothetical protein PHAVU_008G293000g
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V7BDM7	0.0	V7BDM7_PHAVU; Uncharacterized protein
STRING	XP_007142582.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Phvul.008G293000.1
Entrez Gene	18624404

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]