PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G286000.1
Common NamePHAVU_008G286000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 544aa    MW: 60920.7 Da    PI: 6.3428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G286000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.97.8e-1411735431374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++ L++cA+a++++dl +aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++ykal+++e +   s+e l+++++++ev+P++
  Phvul.008G286000.1 173 LKHILVACAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPE---SAELLSYMHILYEVCPYF 260
                         6899*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef+ 
  Phvul.008G286000.1 261 KFGYMSANGAIAEAMKDEDRVHIVDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAyaRGGGLHIVGRRLSKLAEHFKVPFEFHS 351
                         **********************************************************999899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a +  d+++++L v+pgEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s+
  Phvul.008G286000.1 352 -AAISGCDVQVHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESI 441
                         .88899************************************************************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr+++eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr+ee++g+l+lgW
  Phvul.008G286000.1 442 DVTLPRDHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSNR-YRLEERDGALYLGW 531
                         **************************************************************************77.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+ +aW+
  Phvul.008G286000.1 532 MNRDLVASCAWK 543
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098571.017147524IPR005202Transcription factor GRAS
PfamPF035142.7E-138173543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQASEQHRSS SMYYQPLQQI EAYCLPRYRS LNQQLYYHDG GHGTQFSTPS SSELYCTLES  60
SSVAGSFTLY NSPSTVNFSP NGSPISQQDS HSYPPDQYHS PENTYGSPMS GSCITDDLSN  120
FKHKLRELES IMLGPDSDNL DSYDSAISNG NNFASPEMDS WRQTMVAISS KNLKHILVAC  180
AKAIADNDLL MAQWLMDELR QMVSVSGDPI QRLGAYMLEG LVARLAASGS SIYKALRCKE  240
PESAELLSYM HILYEVCPYF KFGYMSANGA IAEAMKDEDR VHIVDFQIGQ GSQWITLIQA  300
FAARPGGPPH IRITGIDDSQ SAYARGGGLH IVGRRLSKLA EHFKVPFEFH SAAISGCDVQ  360
VHNLGVRPGE ALAVNFAFML HHMPDESVST QNHRDRLLRL VRSLSPKVVT LVEQESNTNT  420
AAFFPRFLET LDYYTAMFES IDVTLPRDHK ERINVEQHCL ARDLVNIIAC EGVERVERHE  480
VLGKWRSRFA MAGFTPYPLS SLVNGTIKKL LENYSNRYRL EERDGALYLG WMNRDLVASC  540
AWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-601775438375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G286000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142502.10.0hypothetical protein PHAVU_008G286000g
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLV7BDE60.0V7BDE6_PHAVU; Uncharacterized protein
STRINGXP_007142502.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]